Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N03
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    31   0.93 
11_06_0610 - 25449085-25453284                                         30   2.8  
11_01_0385 + 2915532-2916482                                           29   3.8  
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437...    29   3.8  
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697...    29   6.6  
02_01_0692 + 5179778-5181847                                           29   6.6  
12_02_0547 - 20291895-20292043,20292339-20293164                       28   8.7  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   8.7  

>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 413 TFHPRPSYATPSPPTQKWYPMSPQXKEFVVFLHASHISHTLGCGVAYSRNSGVMN 249
           T  P P+  TP+P      P S + +     + +SH  H L C    S  +G+++
Sbjct: 337 TTQPLPTCGTPAPAPPAGQPSSAEDRATPTGISSSHQGHLLLCRPCLSHRTGLLH 391


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 404 PRPSYATPSPPTQKWYPMSPQXKE 333
           P   Y  P PP+  W P SP+ K+
Sbjct: 504 PPAEYGAPPPPSSGWLPKSPERKK 527


>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 410 FHPRPSYATPSPPTQKWYPMSP 345
           FHP P+ A P P   KW P+ P
Sbjct: 206 FHPPPTPAWPHPGGNKWPPLPP 227


>10_08_0643 +
           19541991-19542188,19543261-19543515,19543598-19543722,
           19543815-19543859,19544618-19544699,19545099-19545167,
           19545276-19545446,19545530-19545595,19546236-19546273,
           19547478-19547759,19548286-19548419,19548887-19548981,
           19549083-19549127,19549250-19549309,19549483-19549584,
           19549852-19549903,19549982-19550034,19550138-19550202,
           19550579-19550630,19550780-19550857
          Length = 688

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 466 IGDWRVETPPAEQLATTKKLCPREWKWELLAPITANXTHQAM 591
           +GDW V T P       K+LC       +L P   N   Q M
Sbjct: 545 VGDWLVNTKPMSNSHHVKELCNSSVSSSILIPHLENLVKQTM 586


>07_03_0006 +
           12268852-12269146,12269362-12269487,12269536-12269753,
           12269918-12270292,12270376-12270610,12270698-12270861
          Length = 470

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 382 GVAYEGRGWNVIGIHAGPANKLSIGICLIGDWRVETPPAEQLATTKKLCPREWKWEL 552
           G A +G G+  I + AG   K    + LI   +         +   +L P +WKWE+
Sbjct: 229 GYAVDGLGFYYIPLPAGQKVKHESNVALIHITKGVLTVMNVTSELDRLIPSKWKWEV 285


>02_01_0692 + 5179778-5181847
          Length = 689

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 554 NSSH-FHSRG-QSFFVVANCSAGGVSTLQSPIRQMPMLNLLAGPA*IPMTFHPRPSYATP 381
           N+SH     G +++F++AN +  G+ST Q+ I Q P+ +     A   +T   R   A P
Sbjct: 133 NASHTIRDTGVETYFIIANLTYQGLSTCQALIAQNPLHDSRGLVAGDNLTVPLR--CACP 190

Query: 380 SPP 372
           SPP
Sbjct: 191 SPP 193


>12_02_0547 - 20291895-20292043,20292339-20293164
          Length = 324

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +1

Query: 307 CEACRNTTNSLXWGDIGYH--FCVGGDGVAYEG-RGWNVIG-IHAGPANKLSIGICLIGD 474
           CE C NT +S       +     +G +G   +G +GWN +   + G  N  + G    G+
Sbjct: 223 CEVCGNTGHSGNDCPETHEEAMFMGNNGYRQQGGQGWNQLRPFYQGGNNSNNNGTRQAGE 282

Query: 475 --WRVETPPAEQLATTKKLCPREWKWELLAP 561
             W +  P  ++ A   K+ P+E+    L P
Sbjct: 283 EEWGIAEPKEDEEAQLDKIPPQEYYDSTLLP 313


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 422 IPMTFHPRPSYATPSPPTQKWYPMSPQ 342
           +P   +P P   TPSPP    YP  P+
Sbjct: 428 LPPVVYPSPPEVTPSPPEIAPYPSPPE 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,607,809
Number of Sequences: 37544
Number of extensions: 469585
Number of successful extensions: 1482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)