Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N01
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    63   3e-10

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 38/103 (36%), Positives = 52/103 (50%)
 Frame = +2

Query: 98  IAVGLRKGXKTTQISAGRKGLTAXAISIXPAXLKGLQTXHSKFVRDLVRXVVGHAQYEXX 277
           +AVGL KG   TQ+   ++              KG+ +  +K VR+LVR + G A YE  
Sbjct: 9   LAVGLNKGHAATQLPVKQR----------QNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 278 AMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 406
            +E+L++S             GTH RAK KREEL NV+   RK
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,405,409
Number of Sequences: 27780
Number of extensions: 130191
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)