Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M18
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    30   0.39 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.8  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -2

Query: 640 IFVSGTFPSLAKYPSESESAHYDAAILLDRPMHVVGNDFPYQYIFGLGLNGGSVWKRQFL 461
           I++     S   Y S + +  YD  + L      V +D+ Y  +   G N  S  KR+ L
Sbjct: 177 IYLKSGLQSWLNYVSTNPNLLYDPELQL-----FVESDYGYSPLINTG-NPTSGLKRKAL 230

Query: 460 SRVPKPQVPCVTVALDRPV 404
            + P P  PC  +A  RP+
Sbjct: 231 KQFPLPPDPCQALANLRPI 249


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 478  WKRQFLSRVPKPQVPCVTVALDRPVKSNINCMMGRFNGCLVIFWI 344
            W++     + K  +P V++A     KSN N +   + G   + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,376
Number of Sequences: 5004
Number of extensions: 74770
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)