Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M18
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   5.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 363 ASLFSGFGNTANIPSVWIELHIV 295
           A LF G G  A + S W+ ++ +
Sbjct: 56  APLFKGIGYAAAVMSCWMNVYYI 78


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -1

Query: 455 GSKTAGPLCYGGSRSAGQVQYQLYDGKI 372
           G +T  P+C G + ++ ++  ++Y+G +
Sbjct: 25  GIQTLQPICVGETGTSQKIIDEVYNGNV 52



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 415 DRPVKSNINCMMGRFN 368
           D  V+S + CMM +FN
Sbjct: 56  DENVQSYVECMMKKFN 71


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 174 CRWWPVGR 151
           CR+WP GR
Sbjct: 200 CRFWPTGR 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,837
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)