Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M15
         (950 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    64   1e-10
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    36   0.056
U28412-4|AAC46593.1|  269|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/49 (57%), Positives = 31/49 (63%)
 Frame = +3

Query: 336 YASXSTDPDNYXGPELVYREWXHWLVGNIPGGDVSAGKTLSGXIGSGPP 482
           Y    TDPD     E  YREW HWLV NIPG D++ G TLS  IG+GPP
Sbjct: 62  YTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPP 110



 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 608 FAEKYNLGAPVAGNFYRAQFDXYVPQLYKSXGA 706
           F  K+ LGAPV GN ++A++D YVP L K  GA
Sbjct: 153 FVAKHKLGAPVFGNLFQAEYDDYVPILNKQLGA 185



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 481 PRVTGIHRYVYILNKQPGK-WDFDXKRLTNTSID 579
           P  TG+HRYVY++ KQ G+  D +  RLTNTS D
Sbjct: 110 PPKTGLHRYVYLIYKQSGRIEDAEHGRLTNTSGD 143


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/49 (57%), Positives = 31/49 (63%)
 Frame = +3

Query: 336 YASXSTDPDNYXGPELVYREWXHWLVGNIPGGDVSAGKTLSGXIGSGPP 482
           Y    TDPD     E  YREW HWLV NIPG D++ G TLS  IG+GPP
Sbjct: 98  YTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPP 146



 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 608 FAEKYNLGAPVAGNFYRAQFDXYVPQLYKSXGA 706
           F  K+ LGAPV GN ++A++D YVP L K  GA
Sbjct: 189 FVAKHKLGAPVFGNLFQAEYDDYVPILNKQLGA 221



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 481 PRVTGIHRYVYILNKQPGK-WDFDXKRLTNTSID 579
           P  TG+HRYVY++ KQ G+  D +  RLTNTS D
Sbjct: 146 PPKTGLHRYVYLIYKQSGRIEDAEHGRLTNTSGD 179


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 288 RDQPXVTLXGXGXCF*YASXSTDPDNYXGPELVYREWXHWLVGNIPGGDVSAG 446
           ++ P   L G      Y     DPDN         EW HWLV NIP  ++  G
Sbjct: 47  KNAPRWALPGADPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDG 99



 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 590 RFSTXXFAEKYNLGAPVAGNFYRAQFD 670
           +F+   F EK  LG P+AGNF+ AQ +
Sbjct: 145 KFNVKQFIEKNKLGDPIAGNFFLAQHE 171


>U28412-4|AAC46593.1|  269|Caenorhabditis elegans Hypothetical
           protein T19C3.2 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 677 HSXRTALCRSCRRQAPPGC-TFQRXXX--WRNEAXPSIDVFVSLFXSKSHFPGCLLRM 513
           H    ++CR C     P   TF+      +R    P   +F S F   +HF G LLR+
Sbjct: 186 HRPSGSVCRCCCHPYTPNPQTFEYLYRKAYRKAETPLTSIFRSPFLGSAHFGGALLRL 243


>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 433 TFLLEKLYRDXSAXDHPRVTGIHRYVYILNKQPGK 537
           TF  ++++RD S   H  +T  H  +Y+L+  PGK
Sbjct: 536 TFECQEVFRDGSINGHIALTRTH--IYVLHDVPGK 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,349
Number of Sequences: 27780
Number of extensions: 215887
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)