Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M15
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.44 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 496 IHRYVYILNKQPGKWDFDXKRLTNTSIDG 582
           IHR VY  N+     + D KR+TN   +G
Sbjct: 339 IHRLVYFQNEYEQPSEEDLKRITNQPSEG 367


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 384 VYREWXHWLVGNI 422
           VY +W HW   N+
Sbjct: 858 VYEDWRHWKFPNL 870


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 538 WDFDXKRLTNT 570
           W+ D KRL+NT
Sbjct: 427 WELDGKRLSNT 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,635
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)