Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M13
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.6  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect(2) = 3.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 274 PPXPPPPXKXVXXXPXPPGXGXXSXLF 354
           PP PPPP + +   P     G    LF
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKPYLF 396



 Score = 21.0 bits (42), Expect(2) = 3.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 265 FXXPPXPPPP 294
           +  PP PPPP
Sbjct: 368 YSPPPPPPPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 234 PXXKNPXXKXFXGXPXPPPPPXXCXXXXXPP 326
           P    P      G P PPPPP        PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 274 PPXPPPPXKXVXXXPXPP 327
           PP PPPP       P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 269 GXPPTPPPP 295
           G PP PPPP
Sbjct: 304 GLPPPPPPP 312



 Score = 22.2 bits (45), Expect(2) = 4.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 275 PPTPPPPXKXF 307
           PP PPPP   F
Sbjct: 308 PPPPPPPSNDF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,125
Number of Sequences: 5004
Number of extensions: 14667
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)