Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_M13
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 33 0.39
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 2.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.8
01_01_0889 + 7008077-7009261 29 3.7
07_01_0753 - 5799733-5799741,5799938-5800642 25 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 25 6.7
01_01_0046 - 331758-332627 25 7.7
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 8.5
12_02_1174 - 26696869-26698191 24 9.6
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +3
Query: 168 KXKAFXNXSGPKISXGKKTRXXPXXKNPXXKXFXGXPXPPPPPXXCXXXXXPP 326
K K+ N S KIS K T + P P PPPPP PP
Sbjct: 398 KSKSSSNGSNEKISKEKATETIQYTELPPPPPLPPPPPPPPPPPPPLPPNMPP 450
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 248 PPXXXFXGXPPTPPPPXKXFXPXXXPRXXG 337
PP G PP PPPP K P P G
Sbjct: 615 PPPPRPPGAPPPPPPPGKPGGPPPPPPRPG 644
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 248 PPXXXFXGXPPTPPPPXKXFXPXXXPRXXG 337
PP G PP PPPP K P P G
Sbjct: 920 PPPPRPPGAPPPPPPPGKPGGPPPPPPPPG 949
>01_01_0889 + 7008077-7009261
Length = 394
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 216 KKTRXXPXXKNPXXKXFXGXPXPPPPP 296
KK R P K+P P PPPPP
Sbjct: 258 KKKRNKPKKKSPSTASSKAAPPPPPPP 284
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 25.4 bits (53), Expect(2) = 6.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 275 PPTPPPPXKXFXPXXXP 325
PP PPPP F P P
Sbjct: 48 PPPPPPPTLVFVPVTSP 64
Score = 21.8 bits (44), Expect(2) = 6.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 251 PXXXFXGXPPTPPPP 295
P + PP PPPP
Sbjct: 37 PAAAYAPPPPPPPPP 51
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.6 bits (51), Expect(2) = 6.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 274 PPXPPPPXKXVXXXPXPP 327
PP PPPP P PP
Sbjct: 586 PPPPPPPPLPNCLVPSPP 603
Score = 22.2 bits (45), Expect(2) = 6.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 265 FXXPPXPPPP 294
F PP PPPP
Sbjct: 561 FSPPPPPPPP 570
>01_01_0046 - 331758-332627
Length = 289
Score = 25.4 bits (53), Expect(2) = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 274 PPXPPPPXKXVXXXPXPP 327
PP PPPP P PP
Sbjct: 26 PPPPPPPSSSRYRPPSPP 43
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 262 FFXXPPXPPPP 294
++ PP PPPP
Sbjct: 17 YWTSPPPPPPP 27
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 274 PPXPPPPXKXVXXXPXPPGXGXXSXL 351
PP PPPP + P PP S L
Sbjct: 79 PPPPPPPPRNSPSPPKPPSQAAQSPL 104
>12_02_1174 - 26696869-26698191
Length = 440
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 219 KTRXXPXXKNPXXKXFXGXPXPPPPP 296
+TR P + P K PPPPP
Sbjct: 132 RTRVEPPHRPPPVKPQPPPSLPPPPP 157
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 276 PXPPPPPXXCXXXXXPP 326
P PPPPP PP
Sbjct: 188 PSPPPPPPTRPPSVKPP 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,875,421
Number of Sequences: 37544
Number of extensions: 210394
Number of successful extensions: 5705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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