Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M13
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.3  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    24   6.1  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 224 PXMXXXKKPPXXXFXGXPPTPPPP 295
           P M     PP     G PP PPPP
Sbjct: 699 PPMFNLNAPPPPGIPGYPPAPPPP 722


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 270 GXPXPPPPPXXCXXXXXPP 326
           G P PPPPP  C     PP
Sbjct: 757 GPPPPPPPPGGCPPPPPPP 775



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 248 PPXXXFXGXPPTPPPP 295
           PP   F G PP PPPP
Sbjct: 775 PPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 270 GXPXPPPPPXXCXXXXXPP 326
           G P PPPPP  C     PP
Sbjct: 757 GPPPPPPPPGGCPPPPPPP 775



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 248 PPXXXFXGXPPTPPPP 295
           PP   F G PP PPPP
Sbjct: 775 PPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 270 GXPXPPPPPXXCXXXXXPP 326
           G P PPPPP  C     PP
Sbjct: 340 GPPPPPPPPGGCPPPPPPP 358



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 248 PPXXXFXGXPPTPPPP 295
           PP   F G PP PPPP
Sbjct: 358 PPPGGFKGGPPPPPPP 373


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 269 GXPPTPPPPXKXF 307
           G PP PPPP   F
Sbjct: 575 GPPPPPPPPPPSF 587



 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 248 PPXXXFXGXPPTPPP 292
           PP     G PP PPP
Sbjct: 542 PPVGMANGGPPPPPP 556


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +3

Query: 192 SGPKISXGKKTRXXPXXKNPXXKXFXGXPXPPPPPXXCXXXXXPP 326
           +G   + G      P    P  +   G P PPPPP        PP
Sbjct: 548 AGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,876,229
Number of Sequences: 27780
Number of extensions: 134997
Number of successful extensions: 1947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)