Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_M10
(938 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08765-1|CAA70018.1| 639|Homo sapiens SF1-Hl1 isoform protein. 31 4.6
L49380-1|AAB04033.1| 639|Homo sapiens transcription factor ZFM1... 31 4.6
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 31 4.6
BC000773-1|AAH00773.1| 265|Homo sapiens Similar to zinc finger ... 31 4.6
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein. 31 4.6
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 31 6.0
X02488-1|CAA26320.1| 94|Homo sapiens protein ( Human pro-alpha... 31 8.0
U88629-1|AAC51232.1| 640|Homo sapiens RNA polymerase II elongat... 31 8.0
BC142702-1|AAI42703.1| 355|Homo sapiens vacuolar protein sortin... 31 8.0
BC141827-1|AAI41828.1| 355|Homo sapiens vacuolar protein sortin... 31 8.0
BC028412-1|AAH28412.1| 640|Homo sapiens elongation factor, RNA ... 31 8.0
AL834261-1|CAD38936.1| 377|Homo sapiens hypothetical protein pr... 31 8.0
AB209343-1|BAD92580.1| 519|Homo sapiens elongation factor, RNA ... 31 8.0
>Y08765-1|CAA70018.1| 639|Homo sapiens SF1-Hl1 isoform protein.
Length = 639
Score = 31.5 bits (68), Expect = 4.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXP 922
P+P G + P PP PP PP PPP P
Sbjct: 568 PLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDP 609
>L49380-1|AAB04033.1| 639|Homo sapiens transcription factor ZFM1
protein.
Length = 639
Score = 31.5 bits (68), Expect = 4.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXP 922
P+P G + P PP PP PP PPP P
Sbjct: 568 PLPPGVQPPLPPGAPPPPPPPPPVSAGMMYAPPPPPPPPMDP 609
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 31.5 bits (68), Expect = 4.6
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +2
Query: 794 FPVPGGXXGXVXPX-IXXNPPTP---PGKXXFXFLGPPSXXP-PPXXPXXP 931
FPVP P NPP P PG+ F F+ PP P PP P P
Sbjct: 111 FPVPPCFPPMPPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMP 161
>BC000773-1|AAH00773.1| 265|Homo sapiens Similar to zinc finger
protein 162 protein.
Length = 265
Score = 31.5 bits (68), Expect = 4.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXP 922
P+P G + P PP PP PP PPP P
Sbjct: 194 PLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDP 235
>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
Length = 1374
Score = 31.5 bits (68), Expect = 4.6
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +2
Query: 794 FPVPGGXXGXVXPX-IXXNPPTP---PGKXXFXFLGPPSXXP-PPXXPXXP 931
FPVP P NPP P PG+ F F+ PP P PP P P
Sbjct: 111 FPVPPCFPPMPPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMP 161
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 31.1 bits (67), Expect = 6.0
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXP 931
P P P + PP PP GPP PPP P P
Sbjct: 315 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSP 359
>X02488-1|CAA26320.1| 94|Homo sapiens protein ( Human
pro-alpha-2(I) mRNA for collagen N-prepropeptide. ).
Length = 94
Score = 30.7 bits (66), Expect = 8.0
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 809 GXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXPG 934
G G P PP PPG+ GPP PP P PG
Sbjct: 34 GPAGDRGPRGERGPPGPPGRDGGD--GPPGPPGPPGPPGPPG 73
>U88629-1|AAC51232.1| 640|Homo sapiens RNA polymerase II elongation
factor ELL2 protein.
Length = 640
Score = 30.7 bits (66), Expect = 8.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 306 LCAAAGCVSSRYSR*AEPEHRDPLMDSTAPQSHILQH-PPTRVSH 175
+C++ VSS R + E DPLM+ A SH+ PPT H
Sbjct: 307 VCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH 351
>BC142702-1|AAI42703.1| 355|Homo sapiens vacuolar protein sorting
37 homolog C (S. cerevisiae) protein.
Length = 355
Score = 30.7 bits (66), Expect = 8.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 818 GXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXPG 934
G P + PP PPG PP PPP P PG
Sbjct: 322 GQPQPSVPLQPPYPPGP------APPYGFPPPPGPAWPG 354
>BC141827-1|AAI41828.1| 355|Homo sapiens vacuolar protein sorting
37 homolog C (S. cerevisiae) protein.
Length = 355
Score = 30.7 bits (66), Expect = 8.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 818 GXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXPG 934
G P + PP PPG PP PPP P PG
Sbjct: 322 GQPQPSVPLQPPYPPGP------APPYGFPPPPGPAWPG 354
>BC028412-1|AAH28412.1| 640|Homo sapiens elongation factor, RNA
polymerase II, 2 protein.
Length = 640
Score = 30.7 bits (66), Expect = 8.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 306 LCAAAGCVSSRYSR*AEPEHRDPLMDSTAPQSHILQH-PPTRVSH 175
+C++ VSS R + E DPLM+ A SH+ PPT H
Sbjct: 307 VCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH 351
>AL834261-1|CAD38936.1| 377|Homo sapiens hypothetical protein
protein.
Length = 377
Score = 30.7 bits (66), Expect = 8.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 818 GXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXPG 934
G P + PP PPG PP PPP P PG
Sbjct: 344 GQPQPSVPLQPPYPPGP------APPYGFPPPPGPAWPG 376
>AB209343-1|BAD92580.1| 519|Homo sapiens elongation factor, RNA
polymerase II, 2 variant protein.
Length = 519
Score = 30.7 bits (66), Expect = 8.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 306 LCAAAGCVSSRYSR*AEPEHRDPLMDSTAPQSHILQH-PPTRVSH 175
+C++ VSS R + E DPLM+ A SH+ PPT H
Sbjct: 186 VCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH 230
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,640,683
Number of Sequences: 237096
Number of extensions: 2229569
Number of successful extensions: 8496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7699
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -