Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_M10
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 1.6
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 1.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 1.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.6
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 30 2.1
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 3.6
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 4.8
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 4.8
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.8
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.8
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 6.3
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 6.3
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 8.4
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 25 9.7
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +2
Query: 803 PGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXPG 934
P G G P PP PPGK G P PP P PG
Sbjct: 223 PPGPPGPPGPPGPQGPPGPPGKD-----GQPGKAGPPGLPGDPG 261
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 269 PXELNPSTGTH*WIQQPPSPIYYSTRRPAFPTNA 168
P +L P T IQ P PI++ T RP PT A
Sbjct: 368 PPQLPPVQITQPPIQTPVQPIFFQTTRPPMPTYA 401
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 269 PXELNPSTGTH*WIQQPPSPIYYSTRRPAFPTNA 168
P +L P T IQ P PI++ T RP PT A
Sbjct: 465 PPQLPPVQITQPPIQTPVQPIFFQTTRPPMPTYA 498
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPGKXXFXFLGPPSXXPPPXXPXXP 931
P P G V P N P PPG + PP+ PP P P
Sbjct: 689 PRPAGLPPGVPPMFNLNAPPPPGIPGY----PPAPPPPGVGPPPP 729
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = -3
Query: 933 PGXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPG 802
PG G G G P P G+ G G+ P PPG
Sbjct: 237 PGDPGPPGDSGIPGPPGPPGMAGPDGIPGMGGAKGQNGPDGPPG 280
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = +2
Query: 797 PVPGGXXGXVXPXIXXNPPTPPG-KXXFXFLGPPSXXPPPXXPXXPG 934
P G G P P P G K + GPP PP P PG
Sbjct: 204 PARSGPPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPGPPGPPGNPG 250
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 933 PGXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPGT 799
PG G G G P P G G G+ P PPGT
Sbjct: 233 PGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGT 277
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 933 PGXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPGT 799
PG G G G P P G G G+ P PPGT
Sbjct: 233 PGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGT 277
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 831 PXXKXTPPPPPXKXXFXFWXPLPXXPP 911
P K TPPPPP K P+P PP
Sbjct: 85 PPAKPTPPPPPPKPTIR-PPPIPASPP 110
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 831 PXXKXTPPPPPXKXXFXFWXPLPXXPP 911
P K TPPPPP K P+P PP
Sbjct: 307 PPAKPTPPPPPPKPTIR-PPPIPASPP 332
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 933 PGXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPGT 799
PG G G +G P PGG+ G G+ P PGT
Sbjct: 258 PGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGTPGT 302
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 933 PGXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPGT 799
PG G G +G P PGG+ G G+ P PGT
Sbjct: 258 PGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGTPGT 302
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -3
Query: 930 GXXGXXGGGXXEGGPKKXKXXXPGGVGGFXXXXGKTXPXXPPG 802
G G G GGP + P G G G P PPG
Sbjct: 167 GPPGPPGHDGPNGGPGQPGQPGPHGPNGHPGKPGSQGPPGPPG 209
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 25.4 bits (53), Expect(2) = 9.7
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 785 FXFFPVPGGXXGXVXPXIXXNPPTPP--GKXXFXFLGPPSXXPPP 913
F P+PG G P + PP G+ + P PPP
Sbjct: 76 FTLAPLPGSPPGMAGPPLLPPAVAPPTNGQETLVGINNPVQPPPP 120
Score = 21.0 bits (42), Expect(2) = 9.7
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 890 PPSXXPPPXXPXXP 931
PP PPP P P
Sbjct: 135 PPPPSPPPPPPPPP 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,559
Number of Sequences: 27780
Number of extensions: 299933
Number of successful extensions: 1213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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