Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_M04
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...   172   6e-44
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    97   4e-21
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    59   7e-10
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    35   0.018
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    32   0.13 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.89 
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   3.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   4.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.3  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   6.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   8.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   8.3  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score =  172 bits (418), Expect = 6e-44
 Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 2/201 (0%)
 Frame = +3

Query: 54  EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEET 233
           E   E  V+ +++    V KYK+AG++   V+++V+  C P A   +IC  GD+L+ E  
Sbjct: 5   EATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAI 64

Query: 234 NKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFI 407
            KV++  KD+ KGIAF T VS N+   H SP+ S+P+    LK GD+ KI LGAHIDGF 
Sbjct: 65  KKVYRT-KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFA 123

Query: 408 AVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKP 587
           ++VA T VV E  V+G AADV               KPG  N+ VT+ + KI+  YGCKP
Sbjct: 124 SLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKP 183

Query: 588 IEGMLSHQLKQFRIDGEKSII 650
           + GMLSHQ ++  IDG+K +I
Sbjct: 184 VAGMLSHQQEREVIDGKKQVI 204



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 625 VLMERRVLYKNPSXAQRKEHEKATLEKYEVYAMDVLIST 741
           V+  ++ +  NPS +QR E +  T E+ EVY +D+L+ST
Sbjct: 196 VIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVST 234


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
 Frame = +3

Query: 63  DEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 242
           D  +    + +    +KY+ AG +V++   QV ++CVP AS REI  +GD L+ E  + +
Sbjct: 4   DPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSI 63

Query: 243 FKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDGF 404
           +K ++  +KGIA  T + VNNC  +++P        ++  Y L+ GD+ KI +G H DG+
Sbjct: 64  YKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGY 122

Query: 405 IAVVAHTVVV 434
            A+++HT+VV
Sbjct: 123 TALISHTIVV 132


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
 Frame = +3

Query: 222 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 401
           +E T +   +E   K GI F T VS+N+C  H++P A +   ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206

Query: 402 FIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAE--- 572
            I   A T+   + +     A V               +      A+ E ++    E   
Sbjct: 207 RIVDSAFTMSF-DPQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEING 265

Query: 573 --YGCKPIEGMLSHQLKQFRIDGEKSI 647
             +  K I  +  H L  + I G KS+
Sbjct: 266 KTHQVKSIRNLCGHNLDPYIIHGGKSV 292


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 282 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 440
           S C SVN  ICH  P    P   L+ GD+  ID+  + +GF   +  T  VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 587 WLTTIFSTYFLNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMS 417
           W++++     L G S  I LST    L + K+ +  M +     C  S  +T + N C +
Sbjct: 5   WVSSLLG---LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQA 61

Query: 416 YNSYKSINVST 384
           Y +  SIN  T
Sbjct: 62  YPNINSINALT 72


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -1

Query: 366  NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 277
            +L+ S+C  V+ QW+  ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 770 CPFHVQLLHPVDIRTSIAYTSYFSSV----AFSCSLRCAXDGF 654
           CPFH + +  + +  ++ + ++  SV    A+SC+L C  D F
Sbjct: 66  CPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVDSF 108


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 702 KV*SVCYGCPNIHWVKQLDVKWTPXVQYTKXL 797
           K+ S+CYG P   ++KQ DV+ T  + Y   L
Sbjct: 332 KLISLCYGRPPGLYLKQTDVRNTTQLPYISEL 363


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 264
           AF T +Q  Y N   NLY+   ++ S  R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 63  DEKEV-EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 179
           D+K +  K I ++L V +   AG++++++ E    KC+P+
Sbjct: 16  DKKSIFMKQIRQELAVAQ---AGELISKINENCFDKCIPE 52


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 428 YCMSYNSYKSINVSTKIYLG*ISF 357
           YC    +YKS+ + T +Y+G   F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 594 PQLAYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFHPQLL 424
           P LAY  + + FS     +   +SS +      +P   ++ L ++ LQ   +LH+H  +L
Sbjct: 375 PSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLIL 434

Query: 423 Y 421
           Y
Sbjct: 435 Y 435


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 218 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 114
           K + KF+   C  +++A C+D L  S H   C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,269
Number of Sequences: 5004
Number of extensions: 71553
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)