Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_M03
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 248 5e-66
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 2.5
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 9.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 248 bits (606), Expect = 5e-66
Identities = 120/221 (54%), Positives = 148/221 (66%)
Frame = +3
Query: 117 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 296
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 297 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXDTLYT 476
Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG D+ Y
Sbjct: 61 VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120
Query: 477 GHTDVTGDEYNVEPVDNGPGAFRCYLDVGLXRTTTGARVFGAMKGAVDXGLQCPSFHQRF 656
GH ++TG++YNVE + F+ LD+GL RTTTG+++F MKG D G+ P RF
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179
Query: 657 XAMMXNPKSSMLKYTGLTSLVCMLLNT*XVLNQDDXDSFKR 779
K + L + + L ++D D +KR
Sbjct: 180 FGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKR 220
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 351 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 238
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 351 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 238
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 246 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 365
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 393 SDQPSHHNVATHVNKQRTQYGHLQSESRP 307
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 393 SDQPSHHNVATHVNKQRTQYGHLQSESRP 307
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 393 SDQPSHHNVATHVNKQRTQYGHLQSESRP 307
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 748 KTXHVFSNMQTKDVSPVYFSIELFGFXIIAXNL*WNEGHWRPXSTAPFIAPKTRAPVVVR 569
+T V + + + VS +S EL F ++A N W P ST P P+ P ++
Sbjct: 375 ETITVMNALTGETVSSGVYSRELCSFFLLAPN-------WMPFSTVPSKNPEPLDPEAIK 427
Query: 568 XKPTSK 551
K K
Sbjct: 428 KKEKEK 433
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,476
Number of Sequences: 27780
Number of extensions: 374256
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -