Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L24
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    32   0.57 
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.0  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   9.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.2  
06_02_0175 - 12624608-12625297                                         28   9.2  

>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = +1

Query: 646 SPWKLLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSVXVVRSKLGCV-HEP- 813
           +P    + +PVPTLP++   + F   G    S H +  R Y        S  G V HEP 
Sbjct: 281 APQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPA 340

Query: 814 -PFSPXAAP-YPVTIVLSXPGKNXFIATGSSH 903
            P  P AAP YP     +      F A  ++H
Sbjct: 341 IPSYPPAAPSYPPATSAASSSVQPFHAEAAAH 372


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 372 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 527
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 741 RKRHASRREKGGQVSGKRQGRNRRAHEELPGGNAW 637
           RK+  S+ +K  +  GK++G+    H+   G N +
Sbjct: 645 RKKKGSKEQKTAKTGGKKKGKEASVHDNPAGQNIY 679


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 321 NESAN---ARGEAVCVLGALPLPRSLTRCAR 404
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 741 RKRHASRREKGGQVSGKRQGRNRRAHEELPGGNA 640
           R+RH   +E GG   G++  R  R  E + GG A
Sbjct: 137 RRRHKGGKEGGGGGEGRKGIRTEREREGVGGGGA 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,579,087
Number of Sequences: 37544
Number of extensions: 533187
Number of successful extensions: 1554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)