Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L23
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0065 + 12013715-12013720,12013899-12014612                       29   6.8  
09_02_0155 - 5066379-5068385                                           28   9.0  

>09_03_0065 + 12013715-12013720,12013899-12014612
          Length = 239

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 281 AFGKTVAPIGHCYEISCGKRMMDYSSCGTIDSS 379
           AFG+  AP G  Y  +CG R + +  C  +D S
Sbjct: 67  AFGEIAAPAGLVYHCACGSRDL-HPCCAGLDRS 98


>09_02_0155 - 5066379-5068385
          Length = 668

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 776 SSYDSFSENVVLFVFSIINFIDNQLYDSSRRLLANNNTIFTA 651
           S+  SFS N   F+F+I +F  ++ YD    L+A +N + TA
Sbjct: 78  STVQSFSVN---FMFAIQSFYSDRSYDGMAFLIAPSNNLSTA 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,434
Number of Sequences: 37544
Number of extensions: 349958
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)