Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L23
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF025451-9|AAB71206.2|  136|Caenorhabditis elegans Hypothetical ...    29   4.6  

>Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical
           protein Y53C12A.8 protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 293 TVAPIGHC-YEISCGKRMMDYSSCGTIDSSDESKCFITDIDLSKPFPDCCPQ 445
           T  PI H   +  C     D S+C +IDS+DES  F+ D   ++     C Q
Sbjct: 49  TPRPIRHVDNQCFCYDNRQDCSTC-SIDSTDESDIFVLDSSETRSRAGSCQQ 99


>AF025451-9|AAB71206.2|  136|Caenorhabditis elegans Hypothetical
           protein C24H12.10 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +2

Query: 131 IYQKMFSRLVVLGFVICVANAATWIGRLPKKP------EHLAHKEGCYVKEIDDVIAFGK 292
           +++ + + L+ +G VI +A A   I +L KKP       HLA K    + +I+DV+   +
Sbjct: 1   MFKYLLALLLTIGLVIALAIAI--IFKLLKKPFQIMKLPHLAFKNVINIMDINDVVTMAQ 58

Query: 293 TVAPIGH 313
           T   + H
Sbjct: 59  TSKNVRH 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,211
Number of Sequences: 27780
Number of extensions: 344808
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)