Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L22
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    31   0.29 
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   6.3  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 197 EPRWKLFKKIEKVGRNVREWINQSGSSYSRHRASK 301
           +PR KLFK+ EK  +  R+W  ++G+  +   A K
Sbjct: 282 DPRIKLFKEQEKAAKAARKWEREAGAREAAAAAQK 316


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 233 VGRNVREWINQSGSSYSRHRASKIIRKVEFI 325
           +GRN+RE +     +  +HR    IR+++F+
Sbjct: 269 LGRNLRESVQNGIQTNHKHRNPDAIRRLQFL 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,501
Number of Sequences: 5004
Number of extensions: 34651
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)