Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L20
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   1.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    28   1.5  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   2.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.4  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   4.5  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   4.5  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   4.5  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 475 VPYFYMSPLDFSARDLTKNSRATVL--VSLEETKFCEQNNYDPEDPRCTRLMLSGKMXKV 648
           +PY   + +D S         + +L  VSLE+T   E+     E+  C RL L       
Sbjct: 634 IPYVRPNIVDSSIAQEKHGQSSNILDIVSLEDTPNFEEIRRTLENNHCARLYLKQARHPC 693

Query: 649 KEGSDEYKF 675
            E  D+ KF
Sbjct: 694 LEAQDDVKF 702


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 452 PSTTDFTFVKGNPSIAGRFEIVANEAQSAL 363
           PS +   FVK  PSI+ +F  +A E +S L
Sbjct: 443 PSCSSHAFVKAIPSISSKFSQLAEEYESQL 472


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 559 EETKFCEQNNYDPEDPRCTRLMLSGKMXKVKEGSDEYKFAK 681
           EE +  E +NYD  + +    +   +  +  EGSD+Y +AK
Sbjct: 285 EEKEKPEISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAK 325


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 307 DPILLXHTKLIAMARYVLHSADWASLATISNLPAIEG 417
           DP  +   K +++A+   H ADW    T+S+L  ++G
Sbjct: 102 DPYFVGSGKFVSLAQLEAHLADWKE--TLSSLLVLQG 136


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  IP*DFELFTNLNSNRLVCSVVLNTKLKYN*FVSRI-FIP 146
           +P   E    L +N +  SVV+ T LKY   +SRI FIP
Sbjct: 150 LPRSSERLVTLETNEIDASVVIETLLKY--ILSRISFIP 186


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 221 DCDWKHDRRGHQRSWQSRD 277
           D  WKHD+  +++ +Q RD
Sbjct: 64  DNSWKHDKYSYEKRYQERD 82


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 502 DFSARDLTKNSRATVLVSLEETKFCEQNNYDPEDPRCTRLMLSGKMXKVKEGSDEYKFAK 681
           DF  + L K   +    S+ E + C +  YD ++P     + +  +    +G  +Y+   
Sbjct: 415 DFPYKHLRKGEYSRFPYSVLEIRECVR--YDEDEPLWISELRNSHLISEIDGFSKYEHGV 472

Query: 682 AALFERHPAM 711
           A LFE++ ++
Sbjct: 473 AILFEKYVSL 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,949
Number of Sequences: 5004
Number of extensions: 70726
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)