Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L18
         (942 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    31   4.6  
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         31   4.6  
BC105018-1|AAI05019.1|  306|Homo sapiens RNA binding protein, au...    31   8.0  
AL031668-6|CAB43742.1|  290|Homo sapiens RNA binding protein, au...    31   8.0  
AL031668-5|CAI22150.1|  306|Homo sapiens RNA binding protein, au...    31   8.0  
AL031668-4|CAI22149.1|  237|Homo sapiens RNA binding protein, au...    31   8.0  
AF148457-1|AAF04487.1|  306|Homo sapiens heterogeneous nuclear r...    31   8.0  

>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P G  R  R  G   G G  GG RGG F GG G
Sbjct: 168 PRGGGRGGRGGGR--GGGGRGGGRGGGFRGGRG 198


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P G  R  R  G   G G  GG RGG F GG G
Sbjct: 168 PRGGGRGGRGGGR--GGGGRGGGRGGGFRGGRG 198


>BC105018-1|AAI05019.1|  306|Homo sapiens RNA binding protein,
           autoantigenic (hnRNP-associated with lethal yellow
           homolog protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P+G K+ D   G A G G  GG  GG   GG G
Sbjct: 219 PDGKKKGD--GGGAGGGGGGGGSGGGGSGGGGG 249


>AL031668-6|CAB43742.1|  290|Homo sapiens RNA binding protein,
           autoantigenic (hnRNP-associated with lethal yellow
           homolog protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P+G K+ D   G A G G  GG  GG   GG G
Sbjct: 203 PDGKKKGD--GGGAGGGGGGGGSGGGGSGGGGG 233


>AL031668-5|CAI22150.1|  306|Homo sapiens RNA binding protein,
           autoantigenic (hnRNP-associated with lethal yellow
           homolog protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P+G K+ D   G A G G  GG  GG   GG G
Sbjct: 219 PDGKKKGD--GGGAGGGGGGGGSGGGGSGGGGG 249


>AL031668-4|CAI22149.1|  237|Homo sapiens RNA binding protein,
           autoantigenic (hnRNP-associated with lethal yellow
           homolog protein.
          Length = 237

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P+G K+ D   G A G G  GG  GG   GG G
Sbjct: 203 PDGKKKGD--GGGAGGGGGGGGSGGGGSGGGGG 233


>AF148457-1|AAF04487.1|  306|Homo sapiens heterogeneous nuclear
           ribonucleoprotein, alternate transcript protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 926 PEGXKRXDRXSGXAAGXGXXGGXRGGXFXGGNG 828
           P+G K+ D   G A G G  GG  GG   GG G
Sbjct: 219 PDGKKKGD--GGGAGGGGGGGGSGGGGSGGGGG 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,444,502
Number of Sequences: 237096
Number of extensions: 790736
Number of successful extensions: 5708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4881
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)