Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L18
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   6.4  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   8.4  

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 920 GXKRXDRXSGXAAGX-GXXGGXRGGXFXGGNG 828
           G  R  R  G   G  G  GG RGG F GG G
Sbjct: 11  GGFRGGRGGGGGGGFRGGRGGDRGGGFRGGRG 42


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 799 TPTGTIKXXRPFPPXKXPPRXPPXXPXPAAXPEXLS 906
           TPT TI    P PP   P    P  P P A P   S
Sbjct: 332 TPTSTISAS-PSPPSPLPTTSGPSPPSPPAPPHEFS 366


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +1

Query: 778 PXSXGXXTPTGTIKXXRPFPPXKXP-PRXPPXXPXPAAXP 894
           P   G   P G      P PP K P  + PP  P PA  P
Sbjct: 128 PGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPP 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,272,305
Number of Sequences: 27780
Number of extensions: 102795
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)