Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L16
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    30   0.42 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.96 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   9.0  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    26   9.0  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 481 DTEEPEKYNLLLESQQPVLLSLIPECCWAEHMVSMELTS--PGQFPRVK 621
           D+ + E  NL+L SQ+P+   ++PE     + +  EL S  P Q P  K
Sbjct: 518 DSSQIENTNLMLSSQRPLSQQIVPEIAAYPNSIRPELLSKLPVQTPNQK 566


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 337 GWIPGIAVQPSGCQKPXRAGDSRFQPXSHAGPXR 236
           G IPG A QP+G  +P   G    QP S   P R
Sbjct: 118 GAIPGFAPQPTGFVQPQPTGFMSQQPASFMQPQR 151


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 692 TGVVPNVF--LIPXQSDPQVERIFLGLTLGNXPGEV 591
           T + PN+F  L+P   D  +  +F+ ++ G+  G+V
Sbjct: 146 TAIPPNIFILLVPKSFDTSMLNLFVAVSAGSLLGDV 181


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -1

Query: 668 LIPXQSDPQVERIFLGLTLGNXPGEVNSIETICSAQQHSGINESSTGCCDSSRRLYFSGS 489
           + P  S  +++  +    L   P  V+      + +Q   +NE+     D+SRR  +   
Sbjct: 11  ITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNSRRAQYDRE 70

Query: 488 SVSASPTNR 462
           S S+S   R
Sbjct: 71  SASSSAKPR 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,713,850
Number of Sequences: 5004
Number of extensions: 74584
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)