Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L16
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       35   0.083
04_04_0881 + 29055724-29059197                                         33   0.25 
04_03_0649 - 18402976-18403220,18403305-18404499                       33   0.33 
12_02_0081 + 13342692-13343514,13343520-13343821                       29   5.4  
01_03_0265 - 14425596-14425739,14427419-14427775                       29   5.4  
04_04_0322 - 24374624-24377698                                         29   7.2  
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    29   7.2  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 35.1 bits (77), Expect = 0.083
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 531 RTAFINSGVLLG*TYGFDGIDLPWXVP 611
           R AFINS + L    GFDG+DL W  P
Sbjct: 139 RRAFINSSIELARANGFDGLDLAWRFP 165


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 219 LMFRRNLQGP-AWLXGWNLESPALXGFWHPLGCTAMPG 329
           LMFR  L+ P A + GWN  SP+    W  + C A  G
Sbjct: 41  LMFRSGLRDPYAAMSGWNASSPSAPCSWRGVACAAGTG 78


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 525 AARTAFINSGVLLG*TYGFDGIDLPWXVPKS 617
           A+R AFI + V +    GFDG+D+ W  P S
Sbjct: 142 ASRAAFIGAAVKVARENGFDGLDVAWRFPAS 172


>12_02_0081 + 13342692-13343514,13343520-13343821
          Length = 374

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 334 SPEHLISWVSLKREPGHRPNTRTTTVRITSLESQV 438
           SPE   SW S  REPG  P   TTT R+   E ++
Sbjct: 265 SPEGSCSWSSGDREPGRLP---TTTFRVFEREDEL 296


>01_03_0265 - 14425596-14425739,14427419-14427775
          Length = 166

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 186 VTLVTNEQAGKLMFRRNLQGPAWLXGWNLESPALXGFWHPLGCTAMPGIQP*TPNKLGVL 365
           V ++  E  GK  F   +   AWL  W ++   +   W  LG  A  GI+  T  +LG +
Sbjct: 48  VHVLPGEVLGKSTFELAVLLMAWLPLWLVDKILVLLAWFVLGNLAKLGIRRPTTGRLGAM 107

Query: 366 KTR 374
             R
Sbjct: 108 GRR 110


>04_04_0322 - 24374624-24377698
          Length = 1024

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 292 VSGTHLAVRLCRVSSPEHLISWVSLKREPGHRPNTRTTTVRITSL 426
           V+ T +   LCR+   E  +  +SL  E G  PN  T T  I  L
Sbjct: 719 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763


>01_05_0553 +
           23185473-23186188,23187096-23187101,23187230-23187374,
           23187887-23188159,23188275-23188338,23188479-23188744,
           23188951-23189045,23189544-23189718,23190669-23191063,
           23191830-23191953,23192864-23192959,23193049-23193120,
           23194687-23194824,23195369-23195549,23195602-23195963,
           23196944-23197386,23197461-23197763,23197857-23198081,
           23198260-23198350,23198702-23198779,23198939-23199229,
           23199316-23199513,23199681-23200163,23200488-23200562,
           23201163-23201324,23201400-23201729,23201816-23201916,
           23202477-23202581,23202931-23203162,23203913-23204257,
           23204346-23204447,23206010-23206153,23206463-23206551,
           23206979-23207061,23207172-23207287,23207824-23207909,
           23208461-23208560,23209270-23209335
          Length = 2451

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 431 LSRLVIRTVVVRVFGLCPGSRFKDTQLIRCSGLDTRHSRTAKW 303
           L RL ++T +  +F + PG +F+D   I   G+    S TA W
Sbjct: 480 LERLAVQTPIRVLFDVVPGIKFQDA--IELVGMQPLSSTTAIW 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,335,204
Number of Sequences: 37544
Number of extensions: 533087
Number of successful extensions: 1155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)