Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L14
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   179   4e-46
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   179   4e-46
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    27   3.4  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   7.8  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  179 bits (436), Expect = 4e-46
 Identities = 89/162 (54%), Positives = 119/162 (73%), Gaps = 5/162 (3%)
 Frame = +3

Query: 189 KLKS*ICECVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQ 368
           ++K+     VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+QNRQ
Sbjct: 9   EVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQ 68

Query: 369 AQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLGRC-----SRHCEDHEKQINGP 533
           A ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL        +   +   K+++G 
Sbjct: 69  AAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGT 128

Query: 534 VPFWAQ*KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 659
           V      K  LGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 129 V------KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 164 MPPKFDPNEIKIVNLR 211
           MPPKFDPNE+K + +R
Sbjct: 1   MPPKFDPNEVKTIFMR 16


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  179 bits (436), Expect = 4e-46
 Identities = 89/162 (54%), Positives = 119/162 (73%), Gaps = 5/162 (3%)
 Frame = +3

Query: 189 KLKS*ICECVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQ 368
           ++K+     VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+QNRQ
Sbjct: 9   EVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQ 68

Query: 369 AQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLGRC-----SRHCEDHEKQINGP 533
           A ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL        +   +   K+++G 
Sbjct: 69  AAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGT 128

Query: 534 VPFWAQ*KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 659
           V      K  LGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 129 V------KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 164 MPPKFDPNEIKIVNLR 211
           MPPKFDPNE+K + +R
Sbjct: 1   MPPKFDPNEVKTIFMR 16


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 454 ISNTTATSPLEDVVGIAKIM---RNRSMARYLSGLSKRDSWAQH--SQLDVLWRAGRHMI 618
           IS T +  P     G+  +    R  S++ YL+ L  RD W QH   Q D++ +  RH++
Sbjct: 754 ISITKSNPPPVKAYGLQLVFIGARGFSISLYLNTLIARDQWKQHIEKQQDIIRK--RHLV 811


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +3

Query: 273 LSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRD-RKKQ 449
           LS +K+ D + +  S+ K      +L ++     +  V + A  + +  K    D R  Q
Sbjct: 343 LSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDVRDVQ 402

Query: 450 KNIKHNGNISLGRCSRHCEDHEKQINGPVPFWAQ*KRFLGTAQSV 584
            +++ N NI L   +        +  GP P + Q +  +GTA+S+
Sbjct: 403 LHLERNWNIRLPGFASDDIVKSARKTGPTPSYQQKQNAIGTAKSL 447


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 668 KHLFINGQSSAVDVINKIMWRPALHSTS 585
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,230
Number of Sequences: 5004
Number of extensions: 59688
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)