Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_L14
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 175 4e-44
02_05_0416 + 28791512-28792012 174 9e-44
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 3.6
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 3.6
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 29 4.7
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 28 8.3
04_04_1482 - 33903276-33903374,33903475-33903600,33904110-339043... 28 8.3
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591... 28 8.3
>04_04_1026 + 30214437-30214937
Length = 166
Score = 175 bits (426), Expect = 4e-44
Identities = 94/152 (61%), Positives = 114/152 (75%), Gaps = 7/152 (4%)
Frame = +3
Query: 219 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPSA 395
GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV+LTVQNRQA+++VVPSA
Sbjct: 19 GGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSA 78
Query: 396 AALIIRALKEPPRDRKKQKNIKHNGNISL------GRCSRHCEDHEKQINGPVPFWAQ*K 557
AAL+I+ALKEP RDRKK KNIKH+GNISL R R+ K++ G V K
Sbjct: 79 AALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRN-RSMAKEMAGTV------K 131
Query: 558 RFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 653
LGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 132 EILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 174 bits (423), Expect = 9e-44
Identities = 94/152 (61%), Positives = 113/152 (74%), Gaps = 7/152 (4%)
Frame = +3
Query: 219 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPSA 395
GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV+LTVQNRQA+++VVPSA
Sbjct: 19 GGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSA 78
Query: 396 AALIIRALKEPPRDRKKQKNIKHNGNISL------GRCSRHCEDHEKQINGPVPFWAQ*K 557
AAL+I+ALKEP RDRKK KNIKH+GNISL R R K++ G V K
Sbjct: 79 AALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRP-RSMAKEMAGTV------K 131
Query: 558 RFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 653
LGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 132 EILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 587 SN*LCCAQESLLLSPERYRAIDLFLMIFAMPTTSS 483
+N C + ESLL++PE + DL + + MP +SS
Sbjct: 1350 ANDACISLESLLVTPEASTSDDLIIESYYMPPSSS 1384
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 321 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 449
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 510 HEKQINGPVPFWAQ*KRFLGTAQSVGCTVEGRPPHDLID 626
H Q+NGP+P W +FL + G P L++
Sbjct: 481 HNNQLNGPIPTWTSSLKFLKYVDISNNNLTGEIPAGLME 519
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 45 FQVRLPTSLKRSGGSPCGIQTHPFGF 122
+ V +P+SL GGS +Q H FGF
Sbjct: 388 YAVLVPSSLLPGGGSARHVQVHAFGF 413
>04_04_1482 -
33903276-33903374,33903475-33903600,33904110-33904351,
33904388-33904626,33904798-33904961,33905738-33906520
Length = 550
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 12 CLLLGPSYILAFQVRLPTSLKRSGGSPCGIQTHP 113
C + S LA +R+ + G+PCG+Q HP
Sbjct: 102 CARVPASQSLALLLRVYAAACADAGAPCGLQFHP 135
>03_02_0146 +
5916692-5917931,5918198-5918261,5918836-5919057,
5919626-5919747,5920105-5920170,5920192-5920386,
5920480-5921057,5921818-5921968,5922465-5922715
Length = 962
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 307 LAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHSQIH 200
+++ +PT + RP P+ A ++P P T +H
Sbjct: 77 VSLVTPTVVNQRPTPPVSPAASRISPNRPGTAKNVH 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,566,575
Number of Sequences: 37544
Number of extensions: 449246
Number of successful extensions: 1158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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