Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L14
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   188   6e-48
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    48   9e-06
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    29   5.6  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    28   9.7  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   9.7  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  188 bits (457), Expect = 6e-48
 Identities = 95/168 (56%), Positives = 120/168 (71%), Gaps = 6/168 (3%)
 Frame = +3

Query: 168 PLSLTQMKLKS*ICECVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 347
           P      ++K     CVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T +
Sbjct: 2   PPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCK 61

Query: 348 LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGN------ISLGRCSRHCED 509
           LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+      I + R  R    
Sbjct: 62  LTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRP-RS 120

Query: 510 HEKQINGPVPFWAQ*KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 653
             K++ G V      K  LGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 121 MAKKLEGTV------KEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 164 MPPKFDPNEIKIVNLR 211
           MPPKFDP EIKIV LR
Sbjct: 1   MPPKFDPTEIKIVYLR 16


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 555 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 653
           K  LGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 15  KEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 252 GPKMMWHRLPRRHIRKFTILISFGSNLGGILLIT 151
           G  ++W    R+ +RKF IL+ F S  GG+L +T
Sbjct: 178 GGALIWFAFWRKQLRKFLILLLFFS-AGGLLAMT 210


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 445 SRKISNTTATSPLEDVVGIAKIMRNRSMARYLSGLS 552
           S+ I N+T TSP+E +  I + +R +S  R+L  +S
Sbjct: 453 SKTIPNSTCTSPMEIIEEICEKIRIKSNFRHLPDIS 488


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 159 TKCPLSLTQMKLKS*ICECVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKI 338
           +KCPL++  M + + +   + G      +  P     GLSPK    D    T +  G  I
Sbjct: 733 SKCPLNVHSMLINTNVELVLRGSGVCNGAATPLASINGLSPKWTTSDSGLLTVNRHG--I 790

Query: 339 TVQLTVQNRQAQIAVVPSAAAL 404
               T   ++ Q+ +   A +L
Sbjct: 791 EADATSGKKEGQVTIQAQAGSL 812


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 338 DLETLPVTCGLGNVITHLFRRQTKRTDFR 252
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,458
Number of Sequences: 27780
Number of extensions: 355203
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)