Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L13
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   171   1e-43
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.51 
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   4.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.3  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  171 bits (416), Expect = 1e-43
 Identities = 84/145 (57%), Positives = 106/145 (73%)
 Frame = +1

Query: 379 QSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTF 558
           +S+AK+LS+ +KQKRKEKA K+ VP+P+VR  A+ E+FKV+++GKSK+ +WKRM+TK TF
Sbjct: 96  ESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATF 155

Query: 559 VGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPKFTNVYKLRCHN 738
           VG+ FTR+P K+ERFIRPMALR KKA+VTH EL  T  LPIIGVKKNP+     +L    
Sbjct: 156 VGDGFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLT 215

Query: 739 *GYSDXS*YF*AGSVTQAGKVVWGK 813
            G          G VT  GKVVWGK
Sbjct: 216 KGTVIEVNVSELGLVTSGGKVVWGK 240



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +3

Query: 222 RGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKQ-NTEKVAEGALPVYLLDR 371
           RGIKAK++ ++RR EKIQMKK IK HEE+N  Q  ++   +GA+P YLLDR
Sbjct: 43  RGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLDR 93


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 341 FGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSFTLPF 165
           F  LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F L F
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVF-LSF 169

Query: 164 XXXISXPATVKLL 126
              +S   ++ +L
Sbjct: 170 LFSLSHLLSLAIL 182


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 469  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 606
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 302 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 180
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 249 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPV 356
           + + NE  + + +  ++ E+N  +NTE++AE + P+
Sbjct: 98  ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,970
Number of Sequences: 5004
Number of extensions: 55906
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)