Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L12
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    69   1e-12
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    38   0.003
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   7.0  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   9.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 49/142 (34%), Positives = 70/142 (49%)
 Frame = +1

Query: 295 LGQGIQPTRELVQNL*XGPSIIRIQRQKGLYFXRRLKVPPPNQPIYPEHWNKNYS*GXFQ 474
           +GQ IQP R+L + +   P  IR+QR++ +    RLKVPP     + +  +KN +   F+
Sbjct: 36  IGQDIQPKRDLSRFV-KWPEYIRLQRRRKI-LNLRLKVPPAIAQ-FQKTLDKNTATQVFK 92

Query: 475 EFWRNTGLRTXXXXXXXXXXXXXXXXXXXXXXXXXXANTIRSGTNTVTKLVEKKKAQLVV 654
              +                                   ++ G N V  L+E KKA+LV+
Sbjct: 93  LLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVL 152

Query: 655 IAHDVDPIELVLFLXALCRKMG 720
           IA DVDPIELV+FL ALC+KMG
Sbjct: 153 IASDVDPIELVVFLPALCKKMG 174


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 592 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLXALC 708
           +R G N  TK + +  ++ +V+A D +PIE++L L  LC
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLC 70


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 317 LVNLSRICKXAQVLSASSARKGCTSXVV*KCPLRINQFTQNTGTRTTAKGLFKNFGEIQ 493
           L++ + +C      S SS  +GCT  +  + PL     +  T +   A  L   FG I+
Sbjct: 102 LIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLLLAFGNIE 160


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 588 YHPIRHKHSHQAGREEEGAACGHR 659
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,514
Number of Sequences: 5004
Number of extensions: 39526
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)