Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L12
         (971 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    71   2e-12
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    68   9e-12
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    36   0.033
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    33   0.41 

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 51/150 (34%), Positives = 75/150 (50%)
 Frame = +1

Query: 265 FETAAKXTLPLGQGIQPTRELVQNL*XGPSIIRIQRQKGLYFXRRLKVPPPNQPIYPEHW 444
           FE  A+    +GQ IQP +++ + +   P  IR+QRQ  +   +RLKVP P    +    
Sbjct: 33  FEKRAR-NFNIGQDIQPKKDVTRFV-KWPKYIRLQRQSAI-LQKRLKVP-PTINQFRTAL 88

Query: 445 NKNYS*GXFQEFWRNTGLRTXXXXXXXXXXXXXXXXXXXXXXXXXXANTIRSGTNTVTKL 624
           +   +   F+   +     T                           NT+R G NT+T+L
Sbjct: 89  DSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRP-NTVRHGVNTITRL 147

Query: 625 VEKKKAQLVVIAHDVDPIELVLFLXALCRK 714
           VE ++AQLV+IAHDV+P+E+VL L ALCRK
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRK 177



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 27/87 (31%), Positives = 38/87 (43%)
 Frame = +3

Query: 243 KQLVXPLLRDSGQRXFAIGSGHSANS*TCPEFVXWPKYYPHPAPERAVLQXSSESAPSES 422
           K++  PL  +   R F IG            FV WPKY      + A+LQ   +  P+  
Sbjct: 26  KEVKNPLF-EKRARNFNIGQDIQPKK-DVTRFVKWPKYI-RLQRQSAILQKRLKVPPT-- 80

Query: 423 TNLPRTLEQELQLRXFSRILEKYRPEN 503
            N  RT       R   ++L+KYRPE+
Sbjct: 81  INQFRTALDSQSARQAFKLLDKYRPES 107


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 68.1 bits (159), Expect = 9e-12
 Identities = 29/43 (67%), Positives = 38/43 (88%)
 Frame = +1

Query: 586 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLXALCRK 714
           NT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL L ALCRK
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRK 157



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 27/87 (31%), Positives = 38/87 (43%)
 Frame = +3

Query: 243 KQLVXPLLRDSGQRXFAIGSGHSANS*TCPEFVXWPKYYPHPAPERAVLQXSSESAPSES 422
           K++  PL  +   R F IG            FV WPKY      + A+LQ   +  P+  
Sbjct: 26  KEVKNPLF-EKRARNFNIGQDIQPKK-DVTRFVKWPKYI-RLQRQSAILQKRLKVPPT-- 80

Query: 423 TNLPRTLEQELQLRXFSRILEKYRPEN 503
            N  RT       R   ++L+KYRPE+
Sbjct: 81  INQFRTALDSQSARQAFKLLDKYRPES 107


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +1

Query: 592 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLXALC 708
           ++ G N  TK + +  ++++V+A D +P+E++L L  LC
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLC 73


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 27/87 (31%), Positives = 38/87 (43%)
 Frame = +3

Query: 243 KQLVXPLLRDSGQRXFAIGSGHSANS*TCPEFVXWPKYYPHPAPERAVLQXSSESAPSES 422
           K++  PL  +   R F IG            FV WPKY      + A+LQ   +  P+  
Sbjct: 129 KEVKNPLF-EKRARNFNIGQDIQPKK-DVTRFVKWPKYI-RLQRQSAILQKRLKVPPT-- 183

Query: 423 TNLPRTLEQELQLRXFSRILEKYRPEN 503
            N  RT       R   ++L+KYRPE+
Sbjct: 184 INQFRTALDSHSARQAFKLLDKYRPES 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,387
Number of Sequences: 27780
Number of extensions: 239397
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)