Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L11
         (1017 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    30   0.45 
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    27   5.6  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   5.6  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   7.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   7.4  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   9.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   9.8  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 26/99 (26%), Positives = 40/99 (40%)
 Frame = +3

Query: 138 LRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*NNSLTRSPSQRTHRTSARLGRTAPS 317
           L L +S  RS   T++   L  H   H  S+I+     +  S S   H  S +LG  +P 
Sbjct: 394 LDLVKSSYRSSFHTKKMTSLFTHNN-HTTSNIQ---REIPASDSIAWHSISKKLGTKSPE 449

Query: 318 PCCNSSNAFAKSLQXSARRRERQGQGRLWNSRGRTSSAR 434
            C         S   + R+ E QG+ R    + ++   R
Sbjct: 450 SCRKQYEKTIASYSSNQRQEEDQGKKRKKRKKKKSKGKR 488


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 242 EQQFNSLTKSKDAQDFSKAWKDGSESVLQQLKRLRQESPXERSE 373
           ++Q NS+T+ +   D +K+W     + L + K   Q+   E  E
Sbjct: 84  QKQINSITQMRTKFDKTKSWLSSKRNTLNKSKESLQKDEAEYVE 127


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 28/95 (29%), Positives = 46/95 (48%)
 Frame = +3

Query: 84  SSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*NNSLTRS 263
           S + SLS+VH      SS     S  RS G++  S    G  T   GSS  + + S +  
Sbjct: 514 SMSASLSSVHTSSATSSSKSSSSSSSRS-GSSSSSSSRSG-STSSSGSSHTITSTSQSVH 571

Query: 264 PSQRTHRTSARLGRTAPSPCCNSSNAFAKSLQXSA 368
            S  +  TS+ +  T+ +   +SS++ + S++ SA
Sbjct: 572 TSGSSTSTSS-VAVTSTAYSSSSSSSSSSSIESSA 605


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query: 451 RPTLNVEKNATALREKLQAAVQ--NTVQESQKLAKKVSSKRAGD**ETGAQDQGRLRRLR 624
           +PTL  +K+    + +  + +Q  NTVQ+    +++ + K   +   T ++ + +   ++
Sbjct: 298 KPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEEIK 357

Query: 625 EEHPGGDQED 654
           EE   G++E+
Sbjct: 358 EEEMEGEEEE 367


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 319 RAATAQTPSPRVSXGALGDANGKAKGGFGTVEAEHRAHG 435
           R + +    PR S   L D     K G GT+   H+ HG
Sbjct: 571 RRSASPLQHPRTSPDML-DKTSPCKRGLGTITTVHKKHG 608


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -1

Query: 387  LAVRVSERSXGDSWRRRLSCCSTDSEPSFQALLKSCASFDLVSELNCCSKVLWNSLGVVF 208
            L + VS  + G S+ R   C  T  + + Q  + +C    +  +L   + V WN LGV+F
Sbjct: 885  LLLPVSWYNLGSSYYRFYEC-DTTKDATLQVAI-NCIKQAI--KLEAKNYVFWNMLGVLF 940

Query: 207  DVLEEVGSVASH 172
               + V S A H
Sbjct: 941  SQTKAVRS-AQH 951


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 442 APARPTLNVEKNATALREKLQAAVQNTVQESQKLAKKVSSKR 567
           APA PT+  E N      K + +V+++ ++  + AKK   +R
Sbjct: 409 APAAPTVEAEVNGVE-DSKKRKSVESSEKDEDEAAKKEEKRR 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,260
Number of Sequences: 5004
Number of extensions: 38600
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)