Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L07
         (1092 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   6e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.59 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 17/33 (51%)
 Frame = -2

Query: 863 PPPXXXXGGXEXXPPPPPPGXXXXXPXXPPPXP 765
           PPP    GG    PPPPPPG     P  PPP P
Sbjct: 752 PPPAPIMGGPP--PPPPPPGVAGAGPPPPPPPP 782



 Score = 31.9 bits (69), Expect = 0.16
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPPGXXXXXPXXPPPXP 765
           PPPP    G     PPPPPP           P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPP 807
           PPPP     G    PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXP-PPPPPGXXXXXPXXPPPXP 765
           PPPP          P P PPP      P  PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.9 bits (64), Expect = 0.65
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPP 807
           PPPP    G     PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPP 807
           PPPP          PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/62 (25%), Positives = 17/62 (27%)
 Frame = -1

Query: 825 PPPPPPXXXXXXPPXXPPPXXXXXXXXXXXXXXFVXGGGXXXXXXKKXPXPPPPXXGGXF 646
           PPPPPP      P   P P                  G          P PP    GG  
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 645 FY 640
           +Y
Sbjct: 792 YY 793



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 327 PPPXXKRXKPPPPPP 283
           PPP      PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 824 PPPPPPGXXXXXPXXPPPXP 765
           PPPPPP      P  PPP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 824 PPPPPPGXXXXXPXXPPPXP 765
           PPPPPPG        PPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPPG 804
           PPPP          PPPPPPG
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 29.9 bits (64), Expect = 0.65
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 837 GXXXPPPPPPXXXXXXPPXXPPP 769
           G   PPPPPP       P  PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 824 PPPPPPGXXXXXPXXPPPXP 765
           PPPPPP         PPP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPP 807
           PPPP    G      PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPP 807
           PPPP          PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
 Frame = -2

Query: 866 PPPPXXXXGGX-------EXXPPPPPPGXXXXXPXXPPP 771
           PPPP     G           PPPPPP         PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect(2) = 0.59
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 861 PPXXXGGXGXXXPPPPPP 808
           PP   G      PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = -2

Query: 866 PPPPXXXXGGXEXXPPPPPPGXXXXXPXXPPPXP 765
           P PP          PP  PP      P  PP  P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 22.2 bits (45), Expect(2) = 0.59
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 822 PPPPPXXXXXXPPXXPPP 769
           PPPPP          PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 4.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 867 SPPPXXXGGXGXXXPPPPPP 808
           +P        G   PPPPPP
Sbjct: 294 APSSGDSANGGLPPPPPPPP 313



 Score = 22.2 bits (45), Expect(2) = 4.6
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -1

Query: 825 PPPPPPXXXXXXPPXXPPP 769
           PPPPPP          P P
Sbjct: 309 PPPPPPSNDFWKDSNEPAP 327


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 819 PPPPXXXXXXPPXXPPP 769
           PPPP      PP  PPP
Sbjct: 48  PPPPSVDHSAPPSGPPP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,602
Number of Sequences: 5004
Number of extensions: 24109
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)