Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L06
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    98   1e-21
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    98   2e-21
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    27   3.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   9.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   9.1  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 54/100 (54%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +1

Query: 208 KVAADQLGADMERGYVLRVAGGNDKQGFPNETGAS*QTAVFVF*CQRATHVT-EPRRDGE 384
           +V  D +G +   GYV ++ GGNDKQGFP   G      V +    RA H    PRRDGE
Sbjct: 35  EVPGDSVGPEFA-GYVFKITGGNDKQGFPMFQGVLLPHRVRLL--LRAGHPCYRPRRDGE 91

Query: 385 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 504
           RKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+
Sbjct: 92  RKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 500 PGRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTP 670
           P RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP
Sbjct: 130 PKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +1

Query: 208 KVAADQLGADMERGYVLRVAGGNDKQGFPNETGAS*QTAVFVF*CQRATHVT-EPRRDGE 384
           +V  D +G +   GYV ++ GGNDKQGFP   G      V +    RA H    PRRDGE
Sbjct: 35  EVPGDSVGPEFA-GYVFKITGGNDKQGFPMFQGVLLPHRVRLL--LRAGHPCYRPRRDGE 91

Query: 385 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 504
           RKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+
Sbjct: 92  RKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 500 PGRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTP 670
           P RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP
Sbjct: 130 PKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTP 184


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 492 SISQSRNFLGTLAHNNKSQDREIGVNNTSTN*FTFSLSIAARFCNMSGPLTSED 331
           +I  S +  G LA    + DR + ++NT T      L   ++ CNM+   TS +
Sbjct: 296 AIGWSPHQRGILASGGGTIDRCLTIHNTLTGRLQNKLDTGSQVCNMAWSKTSNE 349


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 764 SNLAYSAFRGLALSETLFLQSETMTSTLQNYQG*LASGS*VPYVWV*HFLFLPWLGARV 588
           S +    F  + +S TLF+    +   LQ  Q   +     P++WV   L  P+L + V
Sbjct: 260 STILLMVFLSVLVSSTLFVTPLAIKKLLQYLQNPKSDEGNSPFLWVFVLLIGPYLASVV 318


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 715  SVSLSASPLKAEYAKLLAQRXKESKVRRQEKDQTXGGQXSMRDSXK 852
            S  ++ S   A+ AK L+   K   ++RQ  D   GG  S +   K
Sbjct: 1792 SKRIATSKNAAQNAKELSSTAKSGSLKRQRDDANKGGSSSNQKKAK 1837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,424
Number of Sequences: 5004
Number of extensions: 65991
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)