Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L06
         (963 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   101   1e-21
U42843-1|AAA83594.2|  623|Caenorhabditis elegans Skinhead protei...    29   4.9  
Z83117-1|CAB05569.1|  220|Caenorhabditis elegans Hypothetical pr...    29   6.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  101 bits (241), Expect = 1e-21
 Identities = 54/99 (54%), Positives = 68/99 (68%)
 Frame = +1

Query: 208 KVAADQLGADMERGYVLRVAGGNDKQGFPNETGAS*QTAVFVF*CQRATHVTEPRRDGER 387
           +VA D LG D  +GYV+R+ GGNDKQGFP + G      V +   ++       R++GER
Sbjct: 35  EVAIDALG-DEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLL-LKKGQSCYRERKNGER 92

Query: 388 KRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 504
           KRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR
Sbjct: 93  KRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPR 131



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
 Frame = +2

Query: 170 KLRLFXAKAHGRRKSRLIS*ALTWKGAMYFVSLAATTSKDS-RMKQGRPDKQPCSSSDVK 346
           KLRLF  K   +  + + +    WKG  Y V +     K    MKQG            K
Sbjct: 23  KLRLFFEKRMSQEVA-IDALGDEWKG--YVVRIGGGNDKQGFPMKQGILTNGRVRLLLKK 79

Query: 347 GPLMLQNRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LME-MYPGRLGPKR 523
           G    + R   ER+  +  V   +   + S L L+  +     ++ L + + P +LGPKR
Sbjct: 80  GQSCYRERKNGERKRKS--VRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKR 137

Query: 524 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 670
           ASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP
Sbjct: 138 ASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITP 182


>U42843-1|AAA83594.2|  623|Caenorhabditis elegans Skinhead protein
           1, isoform a protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 723 RDAFSSERDDDVYAAELPGVTS--LWILGALCLGLAFSFPS 607
           R  FSS  DD+     + GV+S  +WIL    L L  S PS
Sbjct: 23  RQCFSSVADDEEETTSIYGVSSIFIWILATSSLILVISSPS 63


>Z83117-1|CAB05569.1|  220|Caenorhabditis elegans Hypothetical
           protein M04C7.3 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 68  RSPGXPRKSIAVQRFVPGQRDCQSVGSXVGGXAHKLRLFXAKAHGRRKSR 217
           R PG   KS+     + G R  + VGS V G A ++     +   R   R
Sbjct: 57  RVPGCAVKSVFCDYGIVGSRSSREVGSSVAGNARRIEACAKRTENRSDRR 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,280,752
Number of Sequences: 27780
Number of extensions: 394142
Number of successful extensions: 986
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)