Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L06
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 355 EWPFDIRRRTRLFVRTPLFHSGILACRC 272
           EWP  +R+R  LF+    F S ++   C
Sbjct: 406 EWPRLLRKRKELFIAIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 355 EWPFDIRRRTRLFVRTPLFHSGILACRC 272
           EWP  +R+R  LF+    F S ++   C
Sbjct: 459 EWPRLLRKRKELFIAIVCFVSYLIGLFC 486


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 352 WPFDIRRRTRLFVRTPLFHSGILAC 278
           WP D  R  +L +R P   S  L C
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKC 398


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 352 WPFDIRRRTRLFVRTPLFHSGILAC 278
           WP D  R  +L +R P   S  L C
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKC 398


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 352 THVTEPRRDGERKRKS 399
           ++V E  R+G+RKRKS
Sbjct: 205 SYVLEGPRNGKRKRKS 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,806
Number of Sequences: 438
Number of extensions: 4565
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)