Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L03
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   9.3  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   9.3  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 476 VKSIRHNFLQGLVTVFLHFSVYRLRF 399
           VKSIR +FL  L  +   F VYR  +
Sbjct: 44  VKSIRDSFLSQLENILCFFLVYRTTY 69


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 809 CYSQADASSRYSTLCSKLXSL 747
           C+SQ D+  R+S LCS L  L
Sbjct: 444 CFSQIDSYVRFSILCSLLALL 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,568
Number of Sequences: 5004
Number of extensions: 71446
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)