Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L03
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    27   0.34 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   9.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 774 AITTARISLGIASLPASLEVCAATSLXEAGIATSRI--LMEIXWMLXPIPCS 923
           + T    S+G AS+P++  +     L   G+ T+ I  L  + WML  I  S
Sbjct: 428 SFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 243 WTLYWGILG 269
           W  YWGILG
Sbjct: 336 WNSYWGILG 344


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 243 WTLYWGILG 269
           W  YWGILG
Sbjct: 336 WNSYWGILG 344


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 172 HQNSKGKVTKKMKRRSNSFHL*NQAVWRIKGVNLQLNS 59
           HQ  +GK        S +F +  +A+   +GV  + NS
Sbjct: 34  HQEMQGKEKNSASLNSENFGIFKRALMGFQGVRGKKNS 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,552
Number of Sequences: 438
Number of extensions: 5127
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)