Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L02
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    30   2.4  
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    29   5.7  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic helix-loo...    28   9.9  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = -2

Query: 384 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 223
           L LPPT  N   +   C+    L       ++  SSS P +V +   TV  ++TRL G  
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679

Query: 222 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 76
           +    T  KP    L +   S   S  S  L +S ST + W    S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = -2

Query: 384 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 223
           L LPPT  N   +   C+    L       ++  SSS P +V +   TV  ++TRL G  
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679

Query: 222 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 76
           +    T  KP    L +   S   S  S  L +S ST + W    S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 280 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 101
           RP  G   +LD+ E  GP +V +V+ D  +      D  +G  F  +         CRV+
Sbjct: 97  RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 300 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 184
           +S++P+S  +  +TVC WT  R    A Y   + + P  C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 426 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 262
           + +P   +P PS ++PLPP  +  P S Y  ++  +    ++S+S   S L K +
Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225


>Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical
           protein T24B8.6 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 456 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 280
           TP    +YP  VC+     P PSYT P  P       +Q+  +S +    ++ SSS  AS
Sbjct: 133 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 188


>U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic
           helix-loop-helix DNA bindingprotein HLH-3 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 456 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 280
           TP    +YP  VC+     P PSYT P  P       +Q+  +S +    ++ SSS  AS
Sbjct: 100 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,342
Number of Sequences: 27780
Number of extensions: 379380
Number of successful extensions: 1407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)