Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_L01
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...   100   1e-21
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237     31   0.91 
03_01_0560 + 4162206-4162607                                           30   2.1  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    29   6.4  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    28   8.5  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score =  100 bits (240), Expect = 1e-21
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 1/196 (0%)
 Frame = +1

Query: 286 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 465
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 466 KNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERG 645
           +    R G LL   L  G S+GPL++     D SI++TA +GT + F CF+ AA++A+R 
Sbjct: 87  ERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRR 144

Query: 646 SWXXXXXXXXXXXXSMS-LMTLVNLFMQSHFLYQAXLYLGLMLMCGFVLFDTQLIIEKRR 822
            +             +  L    ++F  S   +   +Y GL++  G++++DTQ IIE+  
Sbjct: 145 EYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAH 204

Query: 823 MGSXDXVQXAXELFID 870
            G  D ++ A  LF D
Sbjct: 205 HGDMDYIKHALTLFTD 220


>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
          Length = 572

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 397 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 573
           AG LS++  AG  L + ++       T+  +G ++GFG+  G         ++ V  S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281

Query: 574 ITALLGTTLVFVCF 615
           I+ L+G  + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 382 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 531
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 417
           N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


>01_01_0827 +
           6443319-6446085,6446317-6446407,6446502-6448017,
           6448164-6448243,6449045-6449129,6449221-6449312,
           6449388-6449456,6449544-6449580,6449662-6449744,
           6450427-6450873,6450978-6451014,6451101-6451158,
           6451243-6451382,6451610-6451675,6451794-6451908,
           6453261-6453299,6453482-6453543
          Length = 1927

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -3

Query: 641 RSASIAAAEKHTNTRVVPSRAVIMID------GSTTLTYSRRGPMLMPDVNPNPSR*PSR 480
           R++++ ++EK +    VP     +++      G T +  S  GP    D+N  P+R P +
Sbjct: 37  RTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKK 96

Query: 479 K 477
           K
Sbjct: 97  K 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,221,794
Number of Sequences: 37544
Number of extensions: 400248
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)