Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K23
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         31   0.22 
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.22 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   4.7  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   6.2  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 437 HIMLCGSS-NYISNI*HTTVIA-FLRVTECIYYYIHILNYVSI 559
           HI  C SS NY  +I H   +A FL +++C YY+ HIL  V +
Sbjct: 48  HIFKCLSSCNYALSILHNICLASFLYLSKC-YYHTHILTSVRL 89


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 277 AIAGPALINPSRTLRPTXSIFLKSFHLGSGAALTAP 170
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 212 EEFPPGLRSSADRAESQHQREDEAQNTYEIHFTEILXCRRIQNSNTISFDANAKND 45
           ++ PP   S+A        R   +Q+T ++   E+    RIQN +  + D    ND
Sbjct: 118 KDMPPMKSSAAVTERPSMHRSAPSQDTLDLKKQELFAGARIQNDDESTTDTIPHND 173


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 214 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFXSAGEFKIPIQYRSTRTLRMIK 41
           L+S H L S  + T PR   N    +    K + P   +   F+I + Y  TR L  I+
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQ 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,583
Number of Sequences: 5004
Number of extensions: 42006
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)