Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K22
         (1009 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    33   0.084
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    28   1.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   2.4  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 32.7 bits (71), Expect = 0.084
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 575 ETRGPIQGRLGLTXRMXGKAITKKLDPLNLKNGXTGAKKP-GPPSLXRKPFFQK 417
           + + P+ G +GLT +   K +   ++P   +NG    K P    S   KPF +K
Sbjct: 820 KNKNPVHGNVGLTNQHGFKTMHHNVNPFTKQNGIMKGKLPSSSTSQSNKPFIEK 873


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 808 EDIGMNAYYYYFHSHLPFWWTSEKYGALKERRGEVTST 921
           +DIGM AY       L F W S+++G    + G +T+T
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG---RKNGMITAT 152


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 868 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 779
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,100
Number of Sequences: 5004
Number of extensions: 70857
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)