Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K21
         (932 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 30   3.1  
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)              28   9.4  

>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 186 PNLKPFKLSRETCWSGVPNCFSVLPPLENSARNSTVPCMTKPXKGISNCINHV-APCRPL 362
           P + P K++   C   V  C   + P  +  + S  PC+      ++ C++ V  P    
Sbjct: 540 PCVDPVKVAVTPCVDPVTPCVDPVTPYVDPVKVSVTPCVDPVKVAVTPCVDPVKVPSESG 599

Query: 363 SSTCC 377
           S T C
Sbjct: 600 SDTLC 604


>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 715 GRVXGGKYTHXGRTQNPVKESXSDVPRXXXGNICNXIKXXNGG 843
           G   G KY + G+   P K + ++  R   GN C  +K  NGG
Sbjct: 676 GCTRGMKYGYLGKESRP-KINRTNGTRVGCGNACAVLKCRNGG 717


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 362 QWPTWGNVVDAVRDTFXRFRHTWNCAIPRTIFQRGKNGKTVWHAAPTCFSRKFEWFQIW 186
           +W  W   +  +   + R+   WN A+      R  N    W+ A  C  R++ W+  W
Sbjct: 108 RWLAWNPALLCLMRQYNRWL-AWNPAL--LCLMRQYNRWLAWNPALLCLMRQYNWWLAW 163



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 362 QWPTWGNVVDAVRDTFXRFRHTWNCAIPRTIFQRGKNGKTVWHAAPTCFSRKFEWFQIW 186
           +W  W   +  +   + R+   WN A+      R  N    W+ A  C  R++ W+  W
Sbjct: 125 RWLAWNPALLCLMRQYNRWL-AWNPAL--LCLMRQYNWWLAWNPALLCLMRQYNWWLAW 180


>SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)
          Length = 162

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 578 EERMXXTWDHALSWPSNDYDRYFXI-QXXPTPE 673
           ++ +   +D+ ++ P+ND+D Y+ I +  PTP+
Sbjct: 92  DDDLLQQYDYLINQPTNDWDLYYWITENKPTPD 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,716,066
Number of Sequences: 59808
Number of extensions: 503647
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)