Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K21
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.98 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.98 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 612  YHGHLTTMIDISPY--XXNLPRRSR 680
            YHG  +T  DISP     +LPRR R
Sbjct: 1819 YHGTSSTSSDISPMSEQKSLPRRGR 1843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 612  YHGHLTTMIDISPY--XXNLPRRSR 680
            YHG  +T  DISP     +LPRR R
Sbjct: 1815 YHGTSSTSSDISPMSEQKSLPRRGR 1839


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 384 SLNNMWMTMADMGQRG*CSSRYLSPVSSYMELCYSS 277
           SL +MW+TM  M     C + +L   ++ ++   SS
Sbjct: 349 SLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSS 384


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 384 SLNNMWMTMADMGQRG*CSSRYLSPVSSYMELCYSS 277
           SL +MW+TM  M     C + +L   ++ ++   SS
Sbjct: 317 SLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSS 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 278 RTIFQRGKNGKTV-WHAAPTCFSRKFEWFQIWAFDL*IKPIVNDCIF 141
           RT F+  +   ++  +A   CF    E  Q   F++ ++P+V+D IF
Sbjct: 169 RTGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIF 215


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 278 RTIFQRGKNGKTV-WHAAPTCFSRKFEWFQIWAFDL*IKPIVNDCIF 141
           RT F+  +   ++  +A   CF    E  Q   F++ ++P+V+D IF
Sbjct: 169 RTGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIF 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,837
Number of Sequences: 438
Number of extensions: 5211
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)