Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K20
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73870.1 68414.m08554 zinc finger (B-box type) family protein       31   0.74 
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   3.9  
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            28   6.9  
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            28   6.9  

>At1g73870.1 68414.m08554 zinc finger (B-box type) family protein
          Length = 392

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 624 GGNACIFIVLSGFA---TSDLSVDFCDARQGGGAYGKRQQRGL 505
           GGN C+  V+ G+    +SD SV     R GGG+ G+R+ R L
Sbjct: 308 GGNTCLPHVVGGYEKLMSSDGSVTRQQGRDGGGSDGEREARVL 350


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 537 RPPDEHHKNRRSSQRW 584
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 302 RPTRGE--RRFAYWALFRFLGSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQ---ERT 466
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ   +R+
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 467 CEQKASKRPG 496
               A +R G
Sbjct: 98  KRSVAEERAG 107


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 302 RPTRGE--RRFAYWALFRFLGSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQ---ERT 466
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ   +R+
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 467 CEQKASKRPG 496
               A +R G
Sbjct: 98  KRSVAEERAG 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,340
Number of Sequences: 28952
Number of extensions: 319836
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)