Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K19
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   171   1e-43

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  171 bits (415), Expect = 1e-43
 Identities = 96/255 (37%), Positives = 128/255 (50%), Gaps = 4/255 (1%)
 Frame = +1

Query: 76  PFXFVXSRPCPFXGAXXXXXXXXXXXXCFHNFNFNLIXXG-SXXTLL-TAYQXCRXXSRX 249
           P+  V + P PF  +              H +  + +  G S   LL T Y   R  S  
Sbjct: 15  PYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMSTE 74

Query: 250 GTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRXLSPNIEIGRI*PPSRITP- 426
               G HT  V KGL+ G                    H  LSP  E+G + PP  I   
Sbjct: 75  ANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIADK 134

Query: 427 -FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYI 603
             +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   QAYEY 
Sbjct: 135 TIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYW 194

Query: 604 EASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y* 783
            A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y 
Sbjct: 195 NAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYW 254

Query: 784 HXVDVV*LFLYISIY 828
           H  DVV LFLY++IY
Sbjct: 255 HFCDVVWLFLYLTIY 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,280
Number of Sequences: 5004
Number of extensions: 31481
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)