Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K16
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...   185   7e-48
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    27   3.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   4.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   9.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   9.5  

>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score =  185 bits (451), Expect = 7e-48
 Identities = 93/163 (57%), Positives = 109/163 (66%), Gaps = 5/163 (3%)
 Frame = +3

Query: 462 MGAPWRGCAMVAKPCAKLWKKPITGVNHCXGHIXMGRLITKANNPTVLYVXGGNXQIIAY 641
           +GAP    A+ A+  + + KKP+  VNHC GHI MGR IT A NP VLYV GGN Q+IAY
Sbjct: 90  IGAPLNSVALCARMLSLIHKKPLVAVNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAY 149

Query: 642 SXKRYRIXGETIDXXVGNCLXRXAXVWKLSNAPXPXYXIXQAAKXGKKYXPLPYCVKGMD 821
           S K+YRI GET+D  +GNCL R A +  LSNAP P Y I Q AK GK++  LPY VKGMD
Sbjct: 150 SEKKYRIFGETLDIAIGNCLDRFARIIGLSNAPSPGYNIMQEAKKGKRFIELPYTVKGMD 209

Query: 822 VSFSGILSYMEDKIDELL-----KEYTPEDLCYSLQETVFAXL 935
            SFSG+LS +E    ELL        T +DLCYSLQET FA L
Sbjct: 210 CSFSGLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAML 252


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +3

Query: 495 AKPCAKLWKKPITGVNHCXGHIXMGRLITKANNPTVLYVXGGNXQIIAYSXK--RYRIXG 668
           AK  A   +KP+  V+H   H    +L    + P +  +  G   ++ YS     + I  
Sbjct: 141 AKGLAVGLQKPLLAVHHMQAHALAVQLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIV 200

Query: 669 ETIDXXVGNCLXRXA 713
            T D  VG+ L + A
Sbjct: 201 TTSDIAVGDYLDKCA 215


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 560 YMSXTMIYTGNRFFP*FSTWFGHHCT-PPPWXPHNQVLWYYRP 435
           Y     I+ G R F   + W G+  T PPP  P+N    Y  P
Sbjct: 563 YRGGPPIHHGERHFDSGNDWHGNPSTVPPPTNPYNPGYPYMDP 605


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 612 SHIALLDYLLWLSTFPF--XYVXYND 541
           S I L + LLWLS+FPF   YV + +
Sbjct: 71  SIIQLYEPLLWLSSFPFCILYVGFGE 96


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 419 GLRPGLVPRLSCQYFMN 369
           GL  GL P  +CQYF N
Sbjct: 219 GLTKGLAPNGTCQYFKN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,259
Number of Sequences: 5004
Number of extensions: 69020
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)