Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K16
         (995 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_28834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  

>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score =  146 bits (355), Expect = 2e-35
 Identities = 72/104 (69%), Positives = 76/104 (73%)
 Frame = +3

Query: 462 MGAPWRGCAMVAKPCAKLWKKPITGVNHCXGHIXMGRLITKANNPTVLYVXGGNXQIIAY 641
           MGAP    A+VA+  A+LWKK I GVNHC GHI MGRLIT ANNPTVLYV GGN Q+IAY
Sbjct: 42  MGAPLVAVAVVARTVAQLWKKLIIGVNHCIGHIEMGRLITGANNPTVLYVSGGNTQVIAY 101

Query: 642 SXKRYRIXGETIDXXVGNCLXRXAXVWKLSNAPXPXYXIXQAAK 773
             KRYRI GETID  VGNCL R A V KLSN P P Y I Q AK
Sbjct: 102 LQKRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYNIEQMAK 145


>SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
 Frame = +3

Query: 486 AMVAKPCAKLWKKPITGVNHCXGHIXMGRLITKANNP----TVLYVXGGNXQII-AYSXK 650
           A   +  A  W  P  GV+H  GH+    L  + N P      L V GG+ Q++   +  
Sbjct: 4   ASTGQALAMAWGVPAIGVHHMEGHLLAPML--EDNPPAFPFVALLVSGGHTQLVKVTAIG 61

Query: 651 RYRIXGETIDXXVGNCLXRXAXVWKLSNAPXPXYXIXQAAKXGKK---YXPLPYCVK-GM 818
            Y + GE++D   G    + A +  L     P   I + A  G +     P P   + G+
Sbjct: 62  AYELLGESLDDAAGEAFDKAAKMLGLDYPGGP--LIAKLAMQGDRTRFRFPRPMTDRPGL 119

Query: 819 DVSFSGILSY-----MEDKIDELLKEYTPEDLCYSLQETV 923
           D SFSG+ ++      E  +D  +   T  D+  + +E V
Sbjct: 120 DFSFSGLKTFTLNTVYEHTVDGSVDAQTKADIAAAFEEAV 159


>SB_28834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 687 VGNCLXRXAXVWKLSNAPXPXYXIXQAAKXGKK 785
           V + L +    WKL N P P     QAA+ GKK
Sbjct: 8   VWDLLMKALPRWKLENTPAPDEAKPQAAEGGKK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,371,998
Number of Sequences: 59808
Number of extensions: 496974
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2967383049
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)