Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K16
         (995 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...   208   6e-54
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    29   6.8  

>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score =  208 bits (507), Expect = 6e-54
 Identities = 103/160 (64%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
 Frame = +3

Query: 462 MGAPWRGCAMVAKPCAKLWKKPITGVNHCXGHIXMGRLITKANNPTVLYVXGGNXQIIAY 641
           MGAP +  A+VA+  +  WKKPI  VNHC GHI MGRLIT A+NP VLYV GGN Q+I+Y
Sbjct: 84  MGAPLQVGAIVARTLSLTWKKPIIPVNHCVGHIEMGRLITGADNPVVLYVSGGNTQVISY 143

Query: 642 SXKRYRIXGETIDXXVGNCLXRXAXVWKLSNAPXPXYXIXQAAKXGKKYXPLPYCVKGMD 821
           + KRYRI GETID  VGNCL R A V KL NAP P Y I Q AK GKK   LPY VKGMD
Sbjct: 144 TKKRYRIFGETIDIAVGNCLDRFARVLKLPNAPSPGYNIEQLAKNGKKLMELPYSVKGMD 203

Query: 822 VSFSGILSYMEDKIDELLK--EYTPEDLCYSLQETVFAXL 935
           VS SGILS +E K  +L++  ++TPEDLC+SLQETVFA L
Sbjct: 204 VSLSGILSLIEKKAPKLIESGDFTPEDLCFSLQETVFAML 243


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 238 IPKFPP-GLFXHFPLQNPLLA 179
           +P FPP  +  HFP  NPLLA
Sbjct: 533 LPNFPPMSMSPHFPYPNPLLA 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,941,825
Number of Sequences: 27780
Number of extensions: 387743
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)