Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K15
         (982 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040043-1|AAH40043.2|  215|Homo sapiens SRA1 protein protein.         33   2.1  
AF293025-1|AAG02115.1|  236|Homo sapiens steroid receptor RNA ac...    33   2.1  
AF293024-1|AAG02114.1|  236|Homo sapiens steroid receptor RNA ac...    33   2.1  
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.              32   2.8  
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.               32   2.8  

>BC040043-1|AAH40043.2|  215|Homo sapiens SRA1 protein protein.
          Length = 215

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = +1

Query: 502 YGLSTESGG*RR----KR-TCEQKGQQKARNXKKAPFAGVXX*APPPLNXPSQKSTLSSE 666
           YGL T++GG RR    KR    Q G  +    + +P  G     PPP   PS K+  S  
Sbjct: 14  YGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSP--GPPPMGPPP---PSSKAPRSPP 68

Query: 667 VAKPDQXYKDTRRFPLESSLVRSPVXXP 750
           V        +   FP+ES  V   V  P
Sbjct: 69  VGSGPASGVEPTSFPVESEAVMEDVLRP 96


>AF293025-1|AAG02115.1|  236|Homo sapiens steroid receptor RNA
           activator isoform 2 protein.
          Length = 236

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = +1

Query: 502 YGLSTESGG*RR----KR-TCEQKGQQKARNXKKAPFAGVXX*APPPLNXPSQKSTLSSE 666
           YGL T++GG RR    KR    Q G  +    + +P  G     PPP   PS K+  S  
Sbjct: 35  YGLQTQAGGPRRSLLIKRVAAPQDGSPRVPASETSP--GPPPMGPPP---PSSKAPRSPP 89

Query: 667 VAKPDQXYKDTRRFPLESSLVRSPVXXP 750
           V        +   FP+ES  V   V  P
Sbjct: 90  VGSGPASGVEPTSFPVESEAVMEDVLRP 117


>AF293024-1|AAG02114.1|  236|Homo sapiens steroid receptor RNA
           activator isoform 1 protein.
          Length = 236

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = +1

Query: 502 YGLSTESGG*RR----KR-TCEQKGQQKARNXKKAPFAGVXX*APPPLNXPSQKSTLSSE 666
           YGL T++GG RR    KR    Q G  +    + +P  G     PPP   PS K+  S  
Sbjct: 35  YGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSP--GPPPMGPPP---PSSKAPRSPP 89

Query: 667 VAKPDQXYKDTRRFPLESSLVRSPVXXP 750
           V        +   FP+ES  V   V  P
Sbjct: 90  VGSGPASGVEPTSFPVESEAVMEDVLRP 117


>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
          Length = 1336

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 462  PERPSAGESVRRGKAGKSGPQIXQNPPFFPRRRLGPISFNCRKKTL 325
            P + S G   + G  G  GPQ  QNP   P    GPI F  +K  L
Sbjct: 864  PPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPL 909


>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
          Length = 1336

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 462  PERPSAGESVRRGKAGKSGPQIXQNPPFFPRRRLGPISFNCRKKTL 325
            P + S G   + G  G  GPQ  QNP   P    GPI F  +K  L
Sbjct: 864  PPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPL 909


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,066,158
Number of Sequences: 237096
Number of extensions: 2370796
Number of successful extensions: 5008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5002
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13102819592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)