Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K15
         (982 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   3.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   3.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 638 GXFRGGGAYXKTPANGAFLXFLAFCWPFCSHVL 540
           G F G G   K P+N  F      C  FC +V+
Sbjct: 26  GGFGGLGGRGKCPSNEIFSRCDGRCQRFCPNVV 58


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 638 GXFRGGGAYXKTPANGAFLXFLAFCWPFCSHVL 540
           G F G G   K P+N  F      C  FC +V+
Sbjct: 26  GGFGGLGGRGKCPSNEIFSRCDGRCQRFCPNVV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,616
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)