Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K13
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.30 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.92 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 476 PPXGPPPPPXXFFXKKKXXXXPPPPXG 556
           PP  PPPPP     +      PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 473 PPPXGPPPPPXXFFXKKKXXXXPPPP 550
           PP   PPPPP   F        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 818 PXPPSPPXKKKXXXXPPPXPP 880
           P PP PP  +     PPP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 818 PXPPSPPXKKKXXXXPPPXPP 880
           P PP PP   +    PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 476 PPXGPPPPPXXFFXKKKXXXXP 541
           PP  PPPPP   + KK+    P
Sbjct: 20  PPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 473 PPPXGPPPPPXXFFXKKK 526
           PP   PPPPP  +  K+K
Sbjct: 20  PPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 599 PXPPXXXGXGPXPPPP 552
           P PP   G GP PPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 818 PXPPSPPXKKKXXXXPPPXPP 880
           P PP PP        PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 818 PXPPSPPXKKKXXXXPPPXPP 880
           P PP PP        PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
 Frame = +2

Query: 473 PPPX----GPPPPPXXFFXKKKXXXXPPPP 550
           PPP     GPPPPP            PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 473  PPPXGPPPPPXXFFXKKKXXXXPPPP 550
            PPP   PPPP            PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 476 PPXGPPPPPXXFFXKKKXXXXPPPPXG 556
           PP  PPPPP   F K      P    G
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAPADNKG 332


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = +2

Query: 818  PXPP---SPPXKKKXXXXPPPXPPXXXPP 895
            P PP   +PP  K     PP  PP   PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,999
Number of Sequences: 5004
Number of extensions: 19762
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)