Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K12
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    38   0.007
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    32   0.65 
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.6  
Z83232-3|CAE46672.1|  381|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z83232-2|CAB05754.2|  420|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   7.9  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   7.9  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        28   7.9  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        28   7.9  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    28   7.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   7.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   7.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   7.9  

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 147 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 317
           P RK   +G+  +  C    EP C  ENPE  D V     C    C C +  VR++ TGK
Sbjct: 71  PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124

Query: 318 CVPESEC 338
           CV +++C
Sbjct: 125 CVEKNKC 131


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 189 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 338
           C QM  P CE+P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +3

Query: 93  IVLLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVP 269
           +V  FV+A+V  +  +       C  GE     C  M  P+    ++   +    P   P
Sbjct: 7   LVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPP 63

Query: 270 QCFCDRPNVRNTKTGKCVPESEC**NCVN 356
           +C C   NVRN  TG  +P      NCV+
Sbjct: 64  KCVCTEGNVRNIITGPSLPALFKPYNCVS 92


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 81  MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 170
           M   ++L F VA VGY+   +   RK PKG
Sbjct: 1   MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 81  MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 170
           M   ++L F VA VGY+   +   RK PKG
Sbjct: 1   MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +3

Query: 741 GFWGXXPVXPPPXNSLXPRSFPLXPT--RXXXSPPXAXKXXXPPXXXGIXPGXNP 899
           G+ G  P  PPP  S+ P   P+ PT       PP       PP      PG  P
Sbjct: 255 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP-PPGRTP 308


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +3

Query: 741 GFWGXXPVXPPPXNSLXPRSFPLXPT--RXXXSPPXAXKXXXPPXXXGIXPGXNP 899
           G+ G  P  PPP  S+ P   P+ PT       PP       PP      PG  P
Sbjct: 265 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP-PPGRTP 318


>Z83232-3|CAE46672.1|  381|Caenorhabditis elegans Hypothetical
           protein K04B12.2b protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  ENVSNEKFYCIVVCCGSCRLRHRATFS 148
           +N+ +E+F+C+  CC   RL    T++
Sbjct: 196 KNLLDEEFFCLAPCCSGMRLFQAETYT 222


>Z83232-2|CAB05754.2|  420|Caenorhabditis elegans Hypothetical
           protein K04B12.2a protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  ENVSNEKFYCIVVCCGSCRLRHRATFS 148
           +N+ +E+F+C+  CC   RL    T++
Sbjct: 235 KNLLDEEFFCLAPCCSGMRLFQAETYT 261


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 794  GXQGVXXRRGNGXXXPKTPXXX-SPGGWADS 705
            G QG   R GN    P TP    SPGGWA S
Sbjct: 1247 GFQGAAGRTGN-PGLPGTPGYPGSPGGWAPS 1276


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 794  GXQGVXXRRGNGXXXPKTPXXX-SPGGWADS 705
            G QG   R GN    P TP    SPGGWA S
Sbjct: 1504 GFQGAAGRTGN-PGLPGTPGYPGSPGGWAPS 1533


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 794  GXQGVXXRRGNGXXXPKTPXXX-SPGGWADS 705
            G QG   R GN    P TP    SPGGWA S
Sbjct: 1503 GFQGAAGRTGN-PGLPGTPGYPGSPGGWAPS 1532


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 174 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 344
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C   
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216

Query: 345 NCVN 356
           +CVN
Sbjct: 217 DCVN 220


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 794 GXQGVXXRRGNGXXXPKTPXXX-SPGGWADS 705
           G QG   R GN    P TP    SPGGWA S
Sbjct: 58  GFQGAAGRTGN-QGLPGTPGYPGSPGGWAPS 87


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 174 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 344
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C   
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216

Query: 345 NCVN 356
           +CVN
Sbjct: 217 DCVN 220


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +2

Query: 713 PNPRGTXXLGFLGXXSRXPASXELPGPPVXPAXXHPXXXXPPXXGXXXXXPXXXGNXPXX 892
           P P+G+  L   G     PA+   P P        P    PP        P   G+ P  
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300

Query: 893 KP 898
            P
Sbjct: 301 PP 302



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +3

Query: 714 PTPGGXXXWGFWGXXPVXPPPXNSLXPRSFPLXPTRXXXSPPXAXKXXXPP 866
           P  GG       G  P  PPP  S  P +  L P +   SPP A     PP
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGS--PPTGSLPPPQAGGSPPPAGTGSPPP 331


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +2

Query: 713 PNPRGTXXLGFLGXXSRXPASXELPGPPVXPAXXHPXXXXPPXXGXXXXXPXXXGNXPXX 892
           P P+G+  L   G     PA+   P P        P    PP        P   G+ P  
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321

Query: 893 KP 898
            P
Sbjct: 322 PP 323



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +3

Query: 714 PTPGGXXXWGFWGXXPVXPPPXNSLXPRSFPLXPTRXXXSPPXAXKXXXPP 866
           P  GG       G  P  PPP  S  P +  L P +   SPP A     PP
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGS--PPTGSLPPPQAGGSPPPAGTGSPPP 352


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +2

Query: 713 PNPRGTXXLGFLGXXSRXPASXELPGPPVXPAXXHPXXXXPPXXGXXXXXPXXXGNXPXX 892
           P P+G+  L   G     PA+   P P        P    PP        P   G+ P  
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306

Query: 893 KP 898
            P
Sbjct: 307 PP 308



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +3

Query: 714 PTPGGXXXWGFWGXXPVXPPPXNSLXPRSFPLXPTRXXXSPPXAXKXXXPP 866
           P  GG       G  P  PPP  S  P +  L P +   SPP A     PP
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGS--PPTGSLPPPQAGGSPPPAGTGSPPP 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,148
Number of Sequences: 27780
Number of extensions: 366799
Number of successful extensions: 897
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)